Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g03176 ATGGAGCAGTCTATCAGAGGCGTTCGCGGGTCCCGTGATGATGACATTAATAACGACGAAAGAAGATATTCTTACAATCGTCTTACGTCGGCTCAAACGGCCAGACTTGAAAAGCTTCGTAATGAAAACCTCCTAATGAAAGAGGCACTGAAGGCCACAAAGTGTGAACCTTGTGGGGGTCCCCCTTTTCCTATGGAAGAGCATGAACATTACAAGCACAAGATGCAACAGGAAAATGATGAGTGTGAGAAAAAGTCCAAGCTTCTTACAAGTTTCATGGAGAGAAAAATATCTCAACCTATGCTTGAGCATGCTCTTAATTCTATACAAGCAATTTCCAGAGACAATGAACTTGAAAATCCACCAACGGTTCATGGAAGTTCAAGTCATGTTCATGGTCTTAGTAATAGGGAAAACGGGAGATACACTCTTGATCATGAAAGCTATTATCAAGTTTTTCCCAAGAACAAACACATTAGTGGTGATACTGTTTCTGAAGAATCTTCAAAGTATTCAGGAATAGTTGGGTTTGATGGCATGAAATTGGTTGAAATGTTTCTCGACTTGggCAAATGGACAAACTTGTTCCCAACAATTGTTACTAAAGCGGAAACTACCAAAGTTCTTGAAACCGGTTCACCAGAAAACCGAGATGGAGCTTTGTTGTtgATGAATGAAGAAATGCATATTTTATCACCTCTAGTGCGGCCTCGCAAATTTAACATAATTCGCTATTGCAAACAAGTTGATGTTGGCATATGGGTGATAACTGATGTGTCATTTGATTCTTCTCGACCTAACACACCACCTCTTTCTTGCTCTTGGAAACATCCTTCTGGATGTATGATTCGTGAAATGCCTAACAAGTCTTGTATGGTTACTTGGGTTGAGCATGTGGAAGTGGAAGATATGCTCCATACACACCACATATTTAGAGATTTTATTGGTAACTATACTTTATATGGAGCTGAAAGCTGGATTAAGGAGCTTCAAAGAATGTGTGTCAAATCTTTCAGTTTTTATGCTGAAACTATACCTGCTGAAGAATCTTTAGGAGTGATCCAAACAATTGAAGGAAGGAGAAATGTGATGAGACTTGCTCAAAGAATAGTTAAGAATTTTTGTGAATGTTTAACAATGGCTGGTCAATTAGAATTCCAACATTTGAATCTTGAAAGTAGCATTGGTGGGGTTAGAGTCTCTCTTCGTCAAGCCAGCATAGGCCAACCAAATAGCATAGTTGTAGCTGCCGCTACAACCCTTTGGCTCCCTCTACATGCTGAATATGTTTTTGAATTCCTAAAAGACCCTACAAAAAGATATCAGTGGGATCTTATGGCTTGTGAAAATCCAATGTATGAGATTGGCCACATTTCAAATGGACTCCATCCTGGTAACTGCACTTCAATTTTTCAGCCATGCATCCCTAGTGAGAACTACTCAATGATTTTACAAGAAACTTTCACATCTCCTATGGGATCATATGTTGTATATGCTCCAATAAATACATCATCTATTACTGCAGCCATAAGGGGTGAAGactcaaaaaacataaaaattctTTCAAGTGGATTTGTTGTGTGTTCGTATGCACAACCAAATGCAAACTTTGAAGCATTTAACAACATTGGAAGTAGTAGTAGTGGTGGTGTTGGAAGAGTAGGAGCTGGCACATTGTTAACTTTGGCCACCCAAATTTTGCCATGTAGCCCAAATGGAATTGACCAGCTCCAAAACATGGAAGCTATTGCTACTATCAACACCCTTTTGTCCACTAGTGTTTTAAAAGTAAGGGGTGCTCTCATGAACTCTAATTAA 1818 0.3878 MEQSIRGVRGSRDDDINNDERRYSYNRLTSAQTARLEKLRNENLLMKEALKATKCEPCGGPPFPMEEHEHYKHKMQQENDECEKKSKLLTSFMERKISQPMLEHALNSIQAISRDNELENPPTVHGSSSHVHGLSNRENGRYTLDHESYYQVFPKNKHISGDTVSEESSKYSGIVGFDGMKLVEMFLDLGKWTNLFPTIVTKAETTKVLETGSPENRDGALLLMNEEMHILSPLVRPRKFNIIRYCKQVDVGIWVITDVSFDSSRPNTPPLSCSWKHPSGCMIREMPNKSCMVTWVEHVEVEDMLHTHHIFRDFIGNYTLYGAESWIKELQRMCVKSFSFYAETIPAEESLGVIQTIEGRRNVMRLAQRIVKNFCECLTMAGQLEFQHLNLESSIGGVRVSLRQASIGQPNSIVVAAATTLWLPLHAEYVFEFLKDPTKRYQWDLMACENPMYEIGHISNGLHPGNCTSIFQPCIPSENYSMILQETFTSPMGSYVVYAPINTSSITAAIRGEDSKNIKILSSGFVVCSYAQPNANFEAFNNIGSSSSGGVGRVGAGTLLTLATQILPCSPNGIDQLQNMEAIATINTLLSTSVLKVRGALMNSN 605
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g03176 605 Coils Coil 65 85 - -
Tsu08g03176 605 Pfam START domain 147 334 IPR002913 GO:0008289
Tsu08g03176 605 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HDG10-RELATED 30 603 - -
Tsu08g03176 605 SMART START_1 113 336 IPR002913 GO:0008289
Tsu08g03176 605 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 30 603 IPR042160 -
Tsu08g03176 605 CDD START_ArGLABRA2_like 137 334 - -
Tsu08g03176 605 Gene3D - 143 319 IPR023393 -
Tsu08g03176 605 Coils Coil 36 56 - -
Tsu08g03176 605 ProSiteProfiles START domain profile. 167 339 IPR002913 GO:0008289
Tsu08g03176 605 SUPERFAMILY Bet v1-like 359 568 - -
Tsu08g03176 605 SUPERFAMILY Bet v1-like 164 336 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu08g03176 Tsu-Chr8 48867779 48872840 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu08g03176 30 601 Homeobox Transcription Factor Family AT1G73360 34.439 2.53e-107 337
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu08g03176 K09338 - gmx:100795075 532.332