Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g03175 ATGGAGCATTCCATCGGAGGCGTTCGCGAGTCCCGTGATGATGACAATAATAACGGCGAAAGAAGATATTCTTACAATCGTCTTACGTCGGCTCAAACAGCCAGACTTGAAAAATGCGATCATCCAAATGAGGCCCAACAACGACAATTGGCTGAGGAGCTTGGGATTCAGCCTAAACAAGTCAAATTTTGGTTCCAAAACCGGAGAACTTTGTTGAAGAATCAATACGAgaaacaaaataacaataatattcgTTTGGAGAATGAAAGGCTTCGTAATGAAAACCTCCTAATGAAAGAGGCACTGAAGGCCACAAAGTGTGAACCTTGTGGGGGTCCCCCTTTTCCTATGGAAGAGCATGAACATTACAAGCACAAGATGCAGCAGGAAAATGATGAGCTAAGAAAAGAGTATGAGGAAAAGTCCAAGCTTCTTACAAATTTCATGGAGAGAAAAATATCTCGACCTATGTTTGAGCATGCTCTTAATTCTATACAACCAATTTCAAGAAACAATGAACTTGAAAATCCACCAACGGTTCATGGAAGTTCAAGTCATGTTCATGGTCTTAGTAATAGGGAAAGTATGTCAGTGAATAGATCAACACAAAAtcatgatgaagaaaaaggAATAATATCTCAACATGCAATTCTTGCTATGCAAGAATTGGTTAGGCTTGTTATAACTAACGAGCCTTTCTGGATCAACATTTCAAATAATCATCAAGATGGAAGATACACTCTTGATCATGAAAGTTATTATCAAGTTTTTCCCAAGAACAATCACATTAGAGGTGATACTGTTTTTGAAGAATCTTCAAAGTATTCAGGAATAGTTGGGTTTGATGGCATGAAATTGGTTGAGATGTTTCTCGACTCAggCAAATGGACAAACTTGTTCCCAACAATTGTTACTAAAGCGGAAATTACCAAAGTTCTTGAAACCGGTTCACTAGAAAATCGAGATGGAGCTTTGTTGTtgATTAATGAAGAAATGCATATTTTATCACCTCTAGTGCGGCCTCGCAAATTTAACATAATTCGCTATTGCAAACAAGTTGATGCTGGCGTATGGGTGATAACTGATGTGTCATTTGATTCTTCTCGACCTAACACACCACCTCTTACTCGCTCCTGGAAACATCCTTCTGGATGTATGATTCGTGAAATGCATAACAAGTCTTGTATGGTTACTTGGGTTGAGCATGTGGAAGTGGAAGATATGCTCCATACACACCACATATTTAGAGATTTTGTTGGTAACTATACTTTATATGGAGCTGAAAGCTGGATTAAGGAGTTTCAAAGAATGTGTGACAAATCTTTCAGTTTTTATGCTGAAACTATACCTGCTGAAGAATCTATAGGAGTGATCCAAACAATTAAAGGAAGGAGAAGTGTGATGAGGCTTGCGCATAGAATGGTTAAGAATTTTTGTGAATGTTTAACAATGGCTGGTCAATTAGAATTCCAACAATTGAATCATGAAAGTAGCATTGGTAGGTGGGATCTTATGGCTTGTGAAAATCCCATGTATGAGATTGGCCACATTTCAAATGGACTCCATCCTGGTAACTGCACTTCAATTTTTCAGCCATGCAGCCCTAGTGAGAACTACTCAATGATTTTACAAGAAAGTTTCACATGTCCTATAGGATCATATGTTGTATTTGCTCCAATAGATACATCATCTATTATTGCAGCCATAAGGGATGAAGACTCAATTTCAAGTGGATTTGTTGTGTGTTCATATGCACAACCAAATGCAAGCTTTGAAGCATTTAACAACATTGGAAGTAGTAGTAGTGGTGGTGTTGGAAGAGTTGGAGCTGGCACATTGTTAACTTTGGCTACCCAAATTTTGACATATAGCCCAAATGGAATTGATCAGCACCAAAACATGGAAGTTGTTGCTACTATAAACACCCTTTTGTCCACTAGTGTTTTAAAAGTAAGGGGTGCTCTCTTGAACTATTCTAATTAA 1983 0.3732 MEHSIGGVRESRDDDNNNGERRYSYNRLTSAQTARLEKCDHPNEAQQRQLAEELGIQPKQVKFWFQNRRTLLKNQYEKQNNNNIRLENERLRNENLLMKEALKATKCEPCGGPPFPMEEHEHYKHKMQQENDELRKEYEEKSKLLTNFMERKISRPMFEHALNSIQPISRNNELENPPTVHGSSSHVHGLSNRESMSVNRSTQNHDEEKGIISQHAILAMQELVRLVITNEPFWINISNNHQDGRYTLDHESYYQVFPKNNHIRGDTVFEESSKYSGIVGFDGMKLVEMFLDSGKWTNLFPTIVTKAEITKVLETGSLENRDGALLLINEEMHILSPLVRPRKFNIIRYCKQVDAGVWVITDVSFDSSRPNTPPLTRSWKHPSGCMIREMHNKSCMVTWVEHVEVEDMLHTHHIFRDFVGNYTLYGAESWIKEFQRMCDKSFSFYAETIPAEESIGVIQTIKGRRSVMRLAHRMVKNFCECLTMAGQLEFQQLNHESSIGRWDLMACENPMYEIGHISNGLHPGNCTSIFQPCSPSENYSMILQESFTCPIGSYVVFAPIDTSSIIAAIRDEDSISSGFVVCSYAQPNASFEAFNNIGSSSSGGVGRVGAGTLLTLATQILTYSPNGIDQHQNMEVVATINTLLSTSVLKVRGALLNYSN 660
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g03175 660 SUPERFAMILY Bet v1-like 206 440 - -
Tsu08g03175 660 ProSiteProfiles 'Homeobox' domain profile. 19 75 IPR001356 GO:0003677
Tsu08g03175 660 MobiDBLite consensus disorder prediction 1 25 - -
Tsu08g03175 660 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HDG10-RELATED 17 491 - -
Tsu08g03175 660 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HDG10-RELATED 490 655 - -
Tsu08g03175 660 Gene3D - 213 423 IPR023393 -
Tsu08g03175 660 Pfam START domain 219 439 IPR002913 GO:0008289
Tsu08g03175 660 Coils Coil 117 151 - -
Tsu08g03175 660 Pfam Homeodomain 25 73 IPR001356 GO:0003677
Tsu08g03175 660 Gene3D - 8 91 - -
Tsu08g03175 660 CDD homeodomain 27 75 IPR001356 GO:0003677
Tsu08g03175 660 MobiDBLite consensus disorder prediction 172 206 - -
Tsu08g03175 660 CDD START_ArGLABRA2_like 209 438 - -
Tsu08g03175 660 MobiDBLite consensus disorder prediction 172 199 - -
Tsu08g03175 660 ProSiteProfiles START domain profile. 205 443 IPR002913 GO:0008289
Tsu08g03175 660 ProSitePatterns 'Homeobox' domain signature. 50 73 IPR017970 GO:0000981|GO:0006355
Tsu08g03175 660 MobiDBLite consensus disorder prediction 1 21 - -
Tsu08g03175 660 Coils Coil 69 108 - -
Tsu08g03175 660 SMART HOX_1 21 79 IPR001356 GO:0003677
Tsu08g03175 660 SMART START_1 214 440 IPR002913 GO:0008289
Tsu08g03175 660 SUPERFAMILY Homeodomain-like 14 82 IPR009057 -
Tsu08g03175 660 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 17 491 IPR042160 -
Tsu08g03175 660 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 490 655 IPR042160 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu08g03175 Tsu-Chr8 48830612 48835668 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu08g03175 21 655 Homeobox Transcription Factor Family AT1G73360 35.185 1.43e-126 389
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-HD-ZIP Tsu08g03175 START 8.9e-30 CL0209
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu08g03175 K09338 - gmx:100795075 584.334