Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g03169 ATGTTTGAGCATGCTCTTAATTCTATACAAGCAATTTCCAGAAACAATGAACTTGAAAATCCACCAACGGTTCATGGAAGTTCAAGTCATGTTCATGGTCTTAGTAATAGGGAAAGTGTGTTAGTGAATAGATCAACACAAAAtcatgatgaagaaaaaggAATGATATCTCAACATGCAATTCTTGCTATGCAAGAATTGGTTAGGCTTGTTAGAACTAATGAGCCTTTCTGGATGAACATTTCAGATAATCATCAAGATGGGAGATACACTCTTGATTATGAAAGTTATTATCAAGTTTTCCCCAAGAAAAATCACATTAGAGGTGATATTGTTTCTGAAGAATCTTCAAAGTATTTAGGAATAGTTGGGTTTGATGGCATGAAATTGGTTCAAATGTTTCTCGACTCGggCAAATGGACAAACTTGTTCCCAACAATTGTTACTAAAGCGGAAACTATCAAAGTTCTTGAAACCGGTTCATCAGAAAATCGAGATGGAGCTTTGTTGTTGATGAATGAAGAAATGCATATTTTATCACCTCTAGTGCGGCCTCGCAAATTTATCATAATTCGCTATTGCAAACAAGTTGATGTTGGCGTATGGGTGATAACTGATGTGCCATTTGATTCTTCTCGACCTAACACATCACCTCTTTCTCGCTCTTGGAAACATCCTTCTGGTTGTATGATTCGTGAAATGCCTAACAAGTCTTGTATGGTTACTTGGGTTGAGCATGTGGAAGTGGAATATATGCTCCATACACACCACATATTTAGAGATTTTGTTGTGATCCAAACAATTGAAGGAAGGAGAAGTGTGATGAGGCTTGCTCATAGAATGGTTAAGAATTTTTGTGAATGTTTAACAATGGCTGGTCAAGTAGAATTCGAACATTTGAATCTTGAAAGTAGCATTGGTGGGGTTAGAGTCTCTCTTCGTCAAGCCAACATAGGCCAACCAAATAGCATAGTTGTAGCTGCCGCTACAACCCTTTGGCTCCCTCTACATGCTGAATATGTTTTTGAATTCCTAAAAGACCCTACGAAAAGATATCAGCCATGCATCTCTAGTGAGAACTACTCGGTGATTTTACAAGAAAGTTTCACATCTCCTATAGGATCATATGTTGTATATGCTGCAATAGATACATCATCTATTACTGCAGCCATAAGGGGTGGAGACtcaaataacattaaaattcTACCAACTGGATTTGTTGTGTGTTCATATGCACAATCAAATGCAAATTTTGAAGCATTTAACAACATTGGAAATAgtagtggtggtggtgttggAAGAGTAGGAGCTGACACATTATTAACTTTGGCCACCCAAATTTTGACATGTAGCCCAAATGGAATTGATCAGCACCAATACATGGAAGCTATTGCTACTATCAACACCCATTTGTCCACTACTGTTCTAAAAGTAAGGGATGCTCTCATTAACTCTAATTAA 1461 0.3593 MFEHALNSIQAISRNNELENPPTVHGSSSHVHGLSNRESVLVNRSTQNHDEEKGMISQHAILAMQELVRLVRTNEPFWMNISDNHQDGRYTLDYESYYQVFPKKNHIRGDIVSEESSKYLGIVGFDGMKLVQMFLDSGKWTNLFPTIVTKAETIKVLETGSSENRDGALLLMNEEMHILSPLVRPRKFIIIRYCKQVDVGVWVITDVPFDSSRPNTSPLSRSWKHPSGCMIREMPNKSCMVTWVEHVEVEYMLHTHHIFRDFVVIQTIEGRRSVMRLAHRMVKNFCECLTMAGQVEFEHLNLESSIGGVRVSLRQANIGQPNSIVVAAATTLWLPLHAEYVFEFLKDPTKRYQPCISSENYSVILQESFTSPIGSYVVYAAIDTSSITAAIRGGDSNNIKILPTGFVVCSYAQSNANFEAFNNIGNSSGGGVGRVGADTLLTLATQILTCSPNGIDQHQYMEAIATINTHLSTTVLKVRDALINSN 486
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g03169 486 Gene3D - 62 269 IPR023393 -
Tsu08g03169 486 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 45 264 IPR042160 -
Tsu08g03169 486 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HDG10-RELATED 264 483 - -
Tsu08g03169 486 MobiDBLite consensus disorder prediction 14 36 - -
Tsu08g03169 486 CDD START_ArGLABRA2_like 53 263 - -
Tsu08g03169 486 Pfam START domain 63 263 IPR002913 GO:0008289
Tsu08g03169 486 SMART START_1 58 284 IPR002913 GO:0008289
Tsu08g03169 486 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HDG10-RELATED 45 264 - -
Tsu08g03169 486 SUPERFAMILY Bet v1-like 50 251 - -
Tsu08g03169 486 ProSiteProfiles START domain profile. 49 263 IPR002913 GO:0008289
Tsu08g03169 486 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 264 483 IPR042160 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu08g03169 Tsu-Chr8 48730659 48733632 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu08g03169 50 482 Homeobox Transcription Factor Family AT1G73360 32.604 1.34e-74 247
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu08g03169 K09338 - gmx:100795075 403.29