Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g03161 ATGATTTATGGAAGATCAACTCATGTTCATGGTCTTAGTAATCTAACTTTGAGGGAAACTATGTTAGTGAATAGATCAACACAAAATTATGATGAAGAAAACAAACTGATATCTCAAGTTGCAATTCTTGCTATTGAAGAATTGGTTAGGCTTGTTAGAACTAATGAGCCTTTTTGGATCAACATTTCAAATACTCATCAAGATGGGAGATACACTCTAGATCATGAAAGTTATTAtcaagtttttcacaagaacaATCATATTAGAGGTGATAATGTTTCTGAAGAATCTTCAAAGTATTCTGGAATAGTTGGGATTGATGGCATGAAATTGGTTGATTTGTTTATCGACTCGGACAAATGGAGAAATTTGTTCCCAACAATTGTTACTAAAGGGGAAACTACCAAAGTGCTTGAAATCGGTTTGTCAGAAAATCGAGATGGAGCTTTGTTGTtgATGAATGAAGAAATGCATATTTTATCACCTCTAGTGCGGCCTCGCGAATTTAACATAATTCGCTATTGCAAACAAGTTTATGTTGGTGTATGGATGATAACCGATGTGTCATTTGATTCTACTCGACCAAACACACCACATCTTTCTTGCTCTTGGAAACATCCTTCTGGATGTATAATTTCTGAAATGCCTAACAAGTCTTGTATGGTTACTTGGATTGAGCATGTGGAGGTAGAAGATATGGTCTATACACACCGCATGTTTAGAGATTTTGTTGCTAACAATAATTTATATGGAGCTGAAAGCTGGATTAAGGAGCTTCAAAGAATGTTGATCCAAATAATCGAAGGAAGGAGGAGTGCTATGAAGATAGCTCATAGAATGGTTCAGATATTTTGTGAATGTTTAACAATGGTTGGTCAATTAGAATTCCAGCATTTGAATCTTGATAATAGCATTGGTGGGGTTAGAGTCTCTCTTCGCCAAGCCAGCATAGACCAGCCAAATGGCataattgttgttgttgctacCACCCTTTGGCTCCCTCTACCTGCTGAATATGTTTTTGAATTCCTCAAAGACCCAACCAAAAGATATTAG 1056 0.3504 MIYGRSTHVHGLSNLTLRETMLVNRSTQNYDEENKLISQVAILAIEELVRLVRTNEPFWINISNTHQDGRYTLDHESYYQVFHKNNHIRGDNVSEESSKYSGIVGIDGMKLVDLFIDSDKWRNLFPTIVTKGETTKVLEIGLSENRDGALLLMNEEMHILSPLVRPREFNIIRYCKQVYVGVWMITDVSFDSTRPNTPHLSCSWKHPSGCIISEMPNKSCMVTWIEHVEVEDMVYTHRMFRDFVANNNLYGAESWIKELQRMLIQIIEGRRSAMKIAHRMVQIFCECLTMVGQLEFQHLNLDNSIGGVRVSLRQASIDQPNGIIVVVATTLWLPLPAEYVFEFLKDPTKRY 351
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g03161 351 SUPERFAMILY Bet v1-like 31 236 - -
Tsu08g03161 351 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN HDG10-RELATED 25 350 - -
Tsu08g03161 351 Pfam START domain 42 261 IPR002913 GO:0008289
Tsu08g03161 351 Gene3D - 43 257 IPR023393 -
Tsu08g03161 351 CDD START_ArGLABRA2_like 36 263 - -
Tsu08g03161 351 SMART START_1 39 265 IPR002913 GO:0008289
Tsu08g03161 351 ProSiteProfiles START domain profile. 30 268 IPR002913 GO:0008289
Tsu08g03161 351 PANTHER HOMEOBOX-LEUCINE ZIPPER PROTEIN MERISTEM L1 25 350 IPR042160 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu08g03161 Tsu-Chr8 48561970 48563776 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu08g03161 31 350 Homeobox Transcription Factor Family AT1G73360 36.950 3.11e-69 228
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu08g03161 K09338 - gmx:100795075 342.043