Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g03154 ATGGATCAATCAAGTAGACGCATTCGCGGGTCCCGTGATGAAGACATTAATAACGACGAAAGAAGATCTTCTTACAATCGTCTAACGTCAGCTCAAACAGCCAGACTTGAAGAttTCATGAAGGAATACAATCATCCAAATGATGCCCAGCGACAACAATTGGCTGAGGAGCTTGGGCTTCAGCCAAAACAAATAAAGTTTTGGTTCCAGAATAAGCGAACTTTGTTGAAGCATGCAAAGGAAAGAGAAGTTTGCGCTGCTCTTCGTACTGAAAATGCAAGGATTTTCGAAATGAACATGATGATGAAGGAGGCACTAAGGAATGTACTTTGCAAATCATGTAGGGCTTCACAAATTTTGAAAGAACTTCGGCTTGAAAATCAACAACTCAAAGAAAGGATTGGGAAGATGTCAAAATTGCTTTCAATGTACGAGGAAAAGGAGGAAGTATCGCTAGAATTGAAGTTAGGACCTCCAACAAGCTCATCAGATGGAGATTTTTTAAAGTTAGTGCTAGAGGCAGGGGCTACTCCTCCAGGAATTGCTAAAGATAATGAGAAGGGCCATGCAACCTGCAAGATAAAGAAATACAAACATTGCTATAATTTGGTGCATGTGTGTCCAAAGTTTTGTCCTAATGAATGTACTGTGGAGTGTGCTTCTTGCAAACCTATTTGTGTTGGAGGGACAAACCCTTCACCTGATTATCCTACCCCTTCTACACCACATAACtcaccttcatcttcttcttcctcttcttcatcctcttcatcttcctcgtcatcttcatcttcatcacctaCAAGCCCGTCTACACCGAAAAATCCACCATCTTCTTCCTCTACACCATCTTCTTCCTCGTCCTCttcatcatcgtcatcatcttcagcatcatcatcttcttcctcttcatcatcgACAAGTCCTTCAACACCAAAAAACCAACCACCTCCATCCTCTACACcgtcttcttcatcttcctcttcatcatcttcttcctcctcttcatcttccgcttcttcttcttcttcatcctcttcatcTCCTCAAGGCCCATCTACACCACAAAGCCCACCAACTTCATCCTCTAcaccatcttcttcttcctcttcatcttcctcttcttcttcttcctcttcctcttccgCTACTTCCACTTCCTCTTCATCACCTGGTAGCCCTTCAACACCACCAAACCCACCATCTTCATCCTCTACaccttcctcttcatcttcatcttcatccacttcttcttcctcctcctcctcttcgTCTTCATCATCATCGCCTCATGGCCCTTCTACACCCCAGAATCCTCCAAAAACATCTCCTTCATCTTCAACTCCTTCAGGAAAAGGTGATACTTCCTCGCACAAAACAGctagatgttggaacaaaaactATCCCAAATGTTACAATATGGAACATGTTTGTCCTAATGCATGTCCCGGCGGCTGTGAGGTTGATTGCAACACTTGCAAACCGGTTTGCAAATGCGATAAACCAGGAGCTGTTTGCCAAGACCCTCGATTCATCGGTGGTGATGGAATCACTTTTTACTTCCACGGCAAGAAAGACAACAACTTCTGCCTTGTTTCTGATACCAACCTCCACATAAACGCTCACTTCATAGGTAGAAGAAACCATAACATGAAGAGGGACTTCACATGGGTCCAATCCATTGCTATTCTCTTCGACAATCACCAACTCTTCCTAGGTGCCAAGAAAACAGCCAGATGGGATGACTCTGTGGACCGTCTTGCCCTCTCTTTTAACGGTGAACCCATCACCATTCCCGAATCAGAAGGTACCAAATGGGAATCGTCTAGTGTGTCCATTGTTAGGGAAACTTCCACAAACAACATCATTGTCGAAGTTGAAGGAAAATTTAGAATAACAGCTAAGGTCGTCCCTATAACCGAAGAAGACTCGAGGATTCATAACTACGGTATCACCAAAGATGATTGTTTTGCTCACCTTGATTTAGGCTTCAAATTCTTTTCTCTAAGCAACGAAGTCAGTGGCGTGTTGGGCCAAACATATAAACCCGATTATGTGAGCCCCATGAACATTGGTGCAAAAATGCCAATAATGGGAGGTGGAAAAGAGTATGAAACAACAAGTTTGTTTTCCCCTGACTGTTCTATAGCTCGTTTCATTGGAAACAATGGATTCAACAATGATATTACAATGGTGGAGAATTTGAACCTCCCTAGCTTGAGCTGCACAAGCGGAATTGATGGACAAGGAGTTGTTTGCAGgagataa 2268 0.3668 MDQSSRRIRGSRDEDINNDERRSSYNRLTSAQTARLEDFMKEYNHPNDAQRQQLAEELGLQPKQIKFWFQNKRTLLKHAKEREVCAALRTENARIFEMNMMMKEALRNVLCKSCRASQILKELRLENQQLKERIGKMSKLLSMYEEKEEVSLELKLGPPTSSSDGDFLKLVLEAGATPPGIAKDNEKGHATCKIKKYKHCYNLVHVCPKFCPNECTVECASCKPICVGGTNPSPDYPTPSTPHNSPSSSSSSSSSSSSSSSSSSSSPTSPSTPKNPPSSSSTPSSSSSSSSSSSSSASSSSSSSSSTSPSTPKNQPPPSSTPSSSSSSSSSSSSSSSSASSSSSSSSSPQGPSTPQSPPTSSSTPSSSSSSSSSSSSSSSSSATSTSSSSPGSPSTPPNPPSSSSTPSSSSSSSSTSSSSSSSSSSSSSPHGPSTPQNPPKTSPSSSTPSGKGDTSSHKTARCWNKNYPKCYNMEHVCPNACPGGCEVDCNTCKPVCKCDKPGAVCQDPRFIGGDGITFYFHGKKDNNFCLVSDTNLHINAHFIGRRNHNMKRDFTWVQSIAILFDNHQLFLGAKKTARWDDSVDRLALSFNGEPITIPESEGTKWESSSVSIVRETSTNNIIVEVEGKFRITAKVVPITEEDSRIHNYGITKDDCFAHLDLGFKFFSLSNEVSGVLGQTYKPDYVSPMNIGAKMPIMGGGKEYETTSLFSPDCSIARFIGNNGFNNDITMVENLNLPSLSCTSGIDGQGVVCRR 755
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g03154 755 Pfam Root cap 663 719 IPR009646 -
Tsu08g03154 755 MobiDBLite consensus disorder prediction 444 459 - -
Tsu08g03154 755 MobiDBLite consensus disorder prediction 1 28 - -
Tsu08g03154 755 MobiDBLite consensus disorder prediction 360 392 - -
Tsu08g03154 755 CDD homeodomain 27 80 IPR001356 GO:0003677
Tsu08g03154 755 PANTHER LATE EMBRYOGENESIS ABUNDANT PROTEIN-RELATED / LEA PROTEIN-LIKE PROTEIN 170 755 - -
Tsu08g03154 755 Gene3D - 16 85 - -
Tsu08g03154 755 SUPERFAMILY Homeodomain-like 21 83 IPR009057 -
Tsu08g03154 755 Pfam Homeodomain 23 77 IPR001356 GO:0003677
Tsu08g03154 755 ProSiteProfiles 'Homeobox' domain profile. 19 79 IPR001356 GO:0003677
Tsu08g03154 755 Coils Coil 120 147 - -
Tsu08g03154 755 MobiDBLite consensus disorder prediction 1 22 - -
Tsu08g03154 755 MobiDBLite consensus disorder prediction 236 459 - -
Tsu08g03154 755 SMART HOX_1 21 83 IPR001356 GO:0003677
Tsu08g03154 755 MobiDBLite consensus disorder prediction 405 432 - -
Tsu08g03154 755 MobiDBLite consensus disorder prediction 242 269 - -
Tsu08g03154 755 MobiDBLite consensus disorder prediction 320 351 - -
Tsu08g03154 755 PANTHER ROOT CAP DOMAIN-CONTAINING PROTEIN 170 755 - -
Tsu08g03154 755 MobiDBLite consensus disorder prediction 278 310 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu08g03154 Tsu-Chr8 48352040 48397032 Proximal
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu08g03154 2 144 Homeobox Transcription Factor Family AT5G17320 43.046 2.03e-26 113
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF HB-other Tsu08g03154 Root_cap 1e-27 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu08g03154 - - mtr:MTR_2g030845 583.178