Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g03134 ATGTTTccacaatttaaaatatttcatatCATCATTTTAATTCTAATATCTCCTTTACTAGCATCAGCACAAGAAGATGGAATCATAGCACAACAAAATTGTAATTCAATATGTGGAGAAGTTTCAATCCCTTTCCCATTCGGAATGAAAGAACGCCATTGTTATGCAAACAAATGGTTCGAAATAGAATGCAAATTAGACAAAACTTCTCATATTCATAAACCTTACTTGAAGTCTTTAAATCTTGaggtaaatttattttatgagaGCTTAGGCTTAGTTCAGGTTATGAATCCGATTTACCGTTCCAATTGTCGCCATAACAAAACTAGTAGCAAGGATAATAAAACTGTTACCATAAACCTTAGCGGGAGTCCTTTTGTATATTCTCAAGATGACAACACATTTCTAGCCGTTGGATGTAACAAACTTGcttttcttcaatcaaatgGAACAAAGATAGGTGGTTGTGTATCAATTTGTGACGAtgacaacaataacaacaatttcGATATTGGTAGCGACAGTTGTAATGGAAAGCATTGTTGTAAGACTTCGTTACCTTCACACCTTTCAGAGTTCAACGCAACATTACAAGGTTTAAGTGACAATAGTAGTGATGGTTGTAGTTATGCTTTGATTACAAGTGATTATTGGATATCTCTTGATAATTCTTATATGGATTATTTGAGGGATGAGTCATTGAATGAGTTGAAGAATATGGAGTATGCTCCGGCATTTCTTGAATGGGAGATTTTGAATGATATGTTGATTAATTCGACATTTCAACTTCCTTCAGATTCAAATTGTTATGACTCTAATGTTACATCTTTAAGTAACAGAACCACTGGTCGGCAATGTCGATGCTCCTTGGGTTACACCGGTAATGCCTACGTTTCTGGAGGCTGCACAGACATTTACAACTCTCAATTACACTCACCACCTTTTTATAATCACCTAATTTATTGTGACAAATGTGTAGGAGTTTCATCAAGCCTCGGATCAATCGGTTTACTCATTGGTCTATGGTTTTTGTATAAAGATATgaagaaaagaataataaagAAACGCAaagaaaaattcttcaaaagaAATGGTGGTTTGTTGTTACAAAAAAGAATGTCATCGGGAGAAGTAAATGTTGAAAGAACTGCTCTCTTCGCCTTAAAGGATTTAAAGAAAGCCACTGAAAACTTCAATAAGAACAGAGTTCTTGGAAAAGGAGGACAAGGTACAGTTTACAAAGGCATGCTAGTCGATGTCGATGGTAAAATCGTTGCAGTGAAAAAGTTTAAGGTCGAAGGAAAGGTTGAAGAGTTCATCAATGAGTTTGTTATTCTTTCACAGATCAACAATAGAAATGTGGTGAAATTATTAGGATGTTGTTTGGAGACAGAAATTCCATTGCTTGTTTATGAATTCATTCCCAATGGTAACCTTTTTGAGTATTTGCATGACCAAAATGAAGACATACCAATGACATGGGACATACGTTTGAGAATTGCAACTGAAATTGCTGGAGCTTTATTTTACTTGCACTCAACTGCATGTCAACCCATTTATCATAGAGACATTAAATCAACAAACATAATGTTGGACGAAAAGTATAGGGCGAAATTGGCAGATTTTGGAGCATCAAGAATAATTTCAATCGAAGCTACTCACCTTACCACAATGGTTCAAGGTACTTTTGGTTACTTAGACCCTGAATATTTTCATACCAGTCAATTTACAGAGAAAAGTGATGTGTATAGCTTTGGAGTAGTTCTTGCTGAACTTTTAACTGGTAAGAAGCCAATATCCTCTGTCGGACATGGGGAATACCAAAACTTGGCTTCCTATTTTGTTCAGTGTATAGAGGAGAATATTTTGTTTGACATTGTTGATGAAAGGGTCATAAAAGAAGGGGAGAAAGAACATGTCATTGCAGTTGCAAATCTTGCATATAGATGCTTAGAGTTGAATGGAAGAAAGCGACCAACTATGAAAGAAGTCATGTTACAATTGGAAGGGATCAGGGAAACAAATAAGAAGCTTGATGCACAACAAAATCGTGAGGAAATTGAGCTTACTGGAATTGAAGAGTACCAACCTTGGGATGGGTATTCTGCATCAAATTCATTGCCAACTGTTGACAGTCAAACATACTCCACAGACTCAGAGGTTATGCATATTCTTGCATTAGAATAG 2190 0.3429 MFPQFKIFHIIILILISPLLASAQEDGIIAQQNCNSICGEVSIPFPFGMKERHCYANKWFEIECKLDKTSHIHKPYLKSLNLEVNLFYESLGLVQVMNPIYRSNCRHNKTSSKDNKTVTINLSGSPFVYSQDDNTFLAVGCNKLAFLQSNGTKIGGCVSICDDDNNNNNFDIGSDSCNGKHCCKTSLPSHLSEFNATLQGLSDNSSDGCSYALITSDYWISLDNSYMDYLRDESLNELKNMEYAPAFLEWEILNDMLINSTFQLPSDSNCYDSNVTSLSNRTTGRQCRCSLGYTGNAYVSGGCTDIYNSQLHSPPFYNHLIYCDKCVGVSSSLGSIGLLIGLWFLYKDMKKRIIKKRKEKFFKRNGGLLLQKRMSSGEVNVERTALFALKDLKKATENFNKNRVLGKGGQGTVYKGMLVDVDGKIVAVKKFKVEGKVEEFINEFVILSQINNRNVVKLLGCCLETEIPLLVYEFIPNGNLFEYLHDQNEDIPMTWDIRLRIATEIAGALFYLHSTACQPIYHRDIKSTNIMLDEKYRAKLADFGASRIISIEATHLTTMVQGTFGYLDPEYFHTSQFTEKSDVYSFGVVLAELLTGKKPISSVGHGEYQNLASYFVQCIEENILFDIVDERVIKEGEKEHVIAVANLAYRCLELNGRKRPTMKEVMLQLEGIRETNKKLDAQQNREEIELTGIEEYQPWDGYSASNSLPTVDSQTYSTDSEVMHILALE 729
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g03134 729 PANTHER WALL ASSOCIATED KINASE-LIKE PROTEIN 15 726 - -
Tsu08g03134 729 Coils Coil 662 689 - -
Tsu08g03134 729 Pfam Protein kinase domain 399 666 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu08g03134 729 Gene3D Transferase(Phosphotransferase) domain 1 475 696 - -
Tsu08g03134 729 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 15 726 IPR045274 GO:0007166
Tsu08g03134 729 Gene3D Phosphorylase Kinase; domain 1 367 474 - -
Tsu08g03134 729 Pfam Wall-associated receptor kinase galacturonan-binding 34 73 IPR025287 GO:0030247
Tsu08g03134 729 ProSiteProfiles Protein kinase domain profile. 399 672 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu08g03134 729 SMART serkin_6 399 672 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu08g03134 729 SUPERFAMILY Protein kinase-like (PK-like) 386 673 IPR011009 -
Tsu08g03134 729 ProSitePatterns Serine/Threonine protein kinases active-site signature. 520 532 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu08g03134 Tsu-Chr8 48170911 48174375 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu08g03134 10 723 Receptor kinase-like Gene Family AT1G16260 42.643 2.09e-179 528
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK Tsu08g03134 Pkinase 5.3e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu08g03134 - - mtr:MTR_2g031530 1053.51