Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g03123 ATGGACACAGCTCAGTGGGCACAGgGTAATATTGGATTGGTTAAACAAATGGATGGATCAACaacatcaaattcaaaaccAGCACCATCTTTGATAGAAAGAAGAGCAAGACCACAAAAAGATCAAGCTATAAATTGTCCAAGGTGCAattcaacaaacacaaaattttgtTACTATAACAATTATAGCCTCTCTCAACCAAGATACTTTTGCAAAACTTGTAGAAGGTATTGGACTGAAGGTGGTTCTTTAAGAAATGTACCTGTTGGTGGTGGttcaagaaaaaacaaaagatcaacaacaacatcttcatcaacatcatcacctTCAATCTCACAATCTCAACTTCAACCTCTTTCATCatctataacaaaaaatattataattaataatccTGATCTAACTAATAATTTTCCTCAATCTGCTTCTCAAAACCCTAAGATCCATCAAGGACAAGATCTTAACCTAGCTTATCCACCACAAACAACTGAGGATAGTTATAATACTATATCTAAATTTATTGAACTTCCTTATAGTACTGAACAAGATCATAAAACTACTACAAGTGCTATGGAGCTTTTGAAAACTTCTTCTTCATCTAGGGGTTTGAATTCTTTTTTGCCTATGAGTTTATCTGAAGGTAGTGCAATGTATAATTCAAGTGGTTTTGCTTTACAAGATTTTAAACTTGGTGTTAATTTTGGTTTAGAAGGGTTTGAGAATGGTTATGGTGGTTTACAAGGGATTAATCAAGAAGGTTCTGGTGGCGGTGTCGGCGGCGGCGGTGCAAGGATGTTGTTTCCTGTTGTGGAAGATCagttgaataataataataataaacagcAGCAGCAACAGCAGCAAGTTCCAAATGGTGGTGGTGAGTTTgataatcataatcatcatcatcagcaGAATAATAATAGAAATCAAGGTGATTCAACTGGTTATTGGAATGGTATGTTAGGTGGTGGATCATGGTAG 981 0.3089 MDTAQWAQGNIGLVKQMDGSTTSNSKPAPSLIERRARPQKDQAINCPRCNSTNTKFCYYNNYSLSQPRYFCKTCRRYWTEGGSLRNVPVGGGSRKNKRSTTTSSSTSSPSISQSQLQPLSSSITKNIIINNPDLTNNFPQSASQNPKIHQGQDLNLAYPPQTTEDSYNTISKFIELPYSTEQDHKTTTSAMELLKTSSSSRGLNSFLPMSLSEGSAMYNSSGFALQDFKLGVNFGLEGFENGYGGLQGINQEGSGGGVGGGGARMLFPVVEDQLNNNNNKQQQQQQQVPNGGGEFDNHNHHHQQNNNRNQGDSTGYWNGMLGGGSW 326
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g03123 326 ProSiteProfiles Zinc finger Dof-type profile. 44 98 IPR003851 GO:0003677|GO:0006355
Tsu08g03123 326 PANTHER DOF ZINC FINGER PROTEIN DOF1.4-RELATED 25 322 IPR045174 GO:0003700|GO:0006355
Tsu08g03123 326 PANTHER DOF ZINC FINGER PROTEIN DOF1.8 25 322 - -
Tsu08g03123 326 MobiDBLite consensus disorder prediction 93 117 - -
Tsu08g03123 326 MobiDBLite consensus disorder prediction 85 117 - -
Tsu08g03123 326 MobiDBLite consensus disorder prediction 278 293 - -
Tsu08g03123 326 ProSitePatterns Zinc finger Dof-type signature. 46 82 IPR003851 GO:0003677|GO:0006355
Tsu08g03123 326 MobiDBLite consensus disorder prediction 1 39 - -
Tsu08g03123 326 Pfam Dof domain, zinc finger 41 98 IPR003851 GO:0003677|GO:0006355
Tsu08g03123 326 MobiDBLite consensus disorder prediction 278 326 - -
Tsu08g03123 326 MobiDBLite consensus disorder prediction 1 29 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu08g03123 Tsu-Chr8 48003826 48005420 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu08g03123 30 326 C2C2-Dof Transcription Factor Family AT3G61850 36.624 2.01e-49 166
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF C2C2-Dof Tsu08g03123 zf-Dof 2e-33 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu08g03123 - - cam:101493540 359.377