Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g03114 ATGGCGTTATCAACTCCACAGATACAAAGATTCCTTTTAACCAAACTCCATAGACGCTACTCAACTTCTTCCAAATCCAACAACTTAAACAGAAACATCTTCAACAGCAGAAGAAGAAGTCGTTGCTACTCTGCCATAGCCATTGATGCACCTTCATCATTGACAGATTCACCTCCTATTAGATGGGGTTCTGTTTCTTTGCAGGGTCCTCGTGAAGAAATGGAAGATGATATTATTCTCAGACCTGATAGTCTTCAAGGTTTCTCTTTTGCTGCTGTTTTTGATGGTCATGGAGGCTTTGCTTCTGTCCAGTTTCTCAGGGATGAGCTATACAAGGAGTGTCTTGAAGCTCTACAAGGTGGGTTATTATTGCTTGAGAAAGATATCAAAGCTGTTGAAGAAGCATTAAGACAGGCATTTGTTAAGGCTGACATGAGGTTGTTAACATGgCTTGAGATGAAAGGGGAGGAGGAGGATGAATCAGGTGCTACAGCCACTGCCATATTCCTAGGAGATAATAAGCTGCTAATTTCACATATTGGCGATTCATCTGTGGTTTTATGCAGATCTGGAAAACCAGAATTGCTGACTAGTCCTCACCGTCCCTATGGGAGCAACACGGCCTCTCTTCAAGAAATCAAAAGAATCAGAGAAGCAGGTGGATGGATTGTCAACGGTAGGATTTGTGGAGATATTGCTGTATCTCGTGCATTTGGGGACATTCGATTCAAAACGAAGAAGAATGAGATGCTACGAAAAGGAGTTCAGGAAGGAAGATGGACAGAAAAATACATTTCTCGTGTACGGTTCAAAGATGACCTGGTTGTCGCACGCCCTGATATTTATCAAGTAACTCTTGGCTCAGATGCAGAATTTATAGTGTTAGCATCCGATGGCTTATGGGATTACATGAGCAGCTTAGACGCAGTTACTTTTGTGAGGGATCAACTACGAAAACATGGAAACACGCAGCTAGCTTGTGAATCCCTTGCACAAGTCGTTTTGGACCAACGTACACAGGATAATGTCAGCATTATAATTGCCGATCTAGGGAAGACAGACTGGAAGAATCTGCCCTTGCAGCAACAAAATGTGATATTTGAGCTAGTCCAAGCCCTTGCCACAGTTGGAATTGTGTCTGTTGGAATCTGGTTTACATCACAGCTTTCTTTATAG 1176 0.4243 MALSTPQIQRFLLTKLHRRYSTSSKSNNLNRNIFNSRRRSRCYSAIAIDAPSSLTDSPPIRWGSVSLQGPREEMEDDIILRPDSLQGFSFAAVFDGHGGFASVQFLRDELYKECLEALQGGLLLLEKDIKAVEEALRQAFVKADMRLLTWLEMKGEEEDESGATATAIFLGDNKLLISHIGDSSVVLCRSGKPELLTSPHRPYGSNTASLQEIKRIREAGGWIVNGRICGDIAVSRAFGDIRFKTKKNEMLRKGVQEGRWTEKYISRVRFKDDLVVARPDIYQVTLGSDAEFIVLASDGLWDYMSSLDAVTFVRDQLRKHGNTQLACESLAQVVLDQRTQDNVSIIIADLGKTDWKNLPLQQQNVIFELVQALATVGIVSVGIWFTSQLSL 391
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g03114 391 CDD PP2Cc 60 350 IPR001932 -
Tsu08g03114 391 PANTHER PROTEIN PHOSPHATASE 2C 7 387 IPR015655 GO:0004722|GO:0006470
Tsu08g03114 391 Pfam Protein phosphatase 2C 63 343 IPR001932 -
Tsu08g03114 391 SMART PP2C_4 51 348 IPR001932 -
Tsu08g03114 391 ProSitePatterns PPM-type phosphatase domain signature. 90 98 IPR000222 GO:0043169
Tsu08g03114 391 PANTHER PROTEIN PHOSPHATASE 2C 57 7 387 - -
Tsu08g03114 391 Gene3D - 60 357 IPR036457 -
Tsu08g03114 391 ProSiteProfiles PPM-type phosphatase domain profile. 61 350 IPR001932 -
Tsu08g03114 391 Coils Coil 115 135 - -
Tsu08g03114 391 SUPERFAMILY PP2C-like 55 351 IPR036457 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu08g03114 Tsu-Chr8 47846445 47851014 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu08g03114 1 327 PP2C-type Phosphatase Gene Family AT4G27800 61.890 7.79e-147 417
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu08g03114 K04457 - vra:106776113 581.252