Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g03107 ATGGGTTTCTCTTTGTTATCAAAAACTACTGCTTGCATTTTGTTCTTCATTCTACTTTCTTGTACTTGCTTCACTTCTACAGACGCGTATGATCCACTTGACCCGAATGGGAATATCACAATAAAATGGGATGTTATTCAATGGACACCAGATGGTTATATGGCTGTTGTTACGATGTACAACTTCCAACAATATCGTCACATTGCTGCGCCCGGCTGGTCCCTTGGATGGACGTGGGCGAAAAAGGAAGTAATATGGAACATGGTGGGATCGCAGACCACCGAACAGGGTGATTGTTCAAAATTCAAAGGGAATATTCCACATTGCTGTAAGAAGGATCCAACTGTTGTTGATTTTCTTCCGGGAACACCGTACAATCAGCAAGTCGCGAATTGCTGTAAAGGCGGGGTGCTCAGTTCATGGGCACAGGATCCTACCAATGCAGTGGCATCATTTCAAATCAGTGTTGGTAAGGCTGGAACCACAAATAAAACAGTTAAAGTCCCCAAAAACTTCACCTTGAAAGCACCCGGACCCGGTTATACTTGTGGTCCGGCAAAAATTGTGAGACCTACTGAGTTTATTCAACCCGACAAAAGGAGAGTGACCCAAGCACTCATGACATGGAATGTTACATGCATGTATTCACAATTTTTGGCTCAGAAAACTCCCACTTGTTGCGTCTCCCTCTCAGCTTTTTACAACGAAACCATTGTATCCTGTCCAACTTGTGCGTGCGGCTGCCAGAGTAACTCATCTCAGTTGGGGAGTTGTTTGTACACTCATATTTCTTTTCCTTGTGGTTACAGTCCAAATACGCCACATTTGGCCTCGGTTGTTGCTGGTAACGGAAAGAATAATTTATCACCTTTGGTGCAATGTACCAGCCACATGTGCCCAATCCGAATCCATTGGCATGTCAAGGTTAACTACAAGGAATACTGGCGTGTGAAGGTTTCTATAACTAATTTTAATTACCGTATGAATTACTCCGATTGGAACTTGGTAGTTCAGCATCCGAACTTCGATAATCTGACTCAGTTATTCAGCTTCAACTACAAGTCATTAAATCCTTATGGTTCAATAAATGATACAGCAATGCTATGGGGTGTGAAGTTCTATAATGATTTTCTTAATCATGTTGGTCCTAGTGGCAATGTTCAATCTGAGCTACTCTTCCGAAAGGAGGATATGTCACATTTCAGTTTTGAGAAGGGTTGGGGTTTCCCTCATAGAATCTACTTCAATGGCGACAACTGTGTGATGCCACCACCCGATGCGTATCCATGGTTACCTAATGCCGGTTCTCGGCAAGAGGTTTCATTGTTTGCTTTAGTAATGGTAGTCTTAGCATTTTATGCACACACTTAA 1371 0.4267 MGFSLLSKTTACILFFILLSCTCFTSTDAYDPLDPNGNITIKWDVIQWTPDGYMAVVTMYNFQQYRHIAAPGWSLGWTWAKKEVIWNMVGSQTTEQGDCSKFKGNIPHCCKKDPTVVDFLPGTPYNQQVANCCKGGVLSSWAQDPTNAVASFQISVGKAGTTNKTVKVPKNFTLKAPGPGYTCGPAKIVRPTEFIQPDKRRVTQALMTWNVTCMYSQFLAQKTPTCCVSLSAFYNETIVSCPTCACGCQSNSSQLGSCLYTHISFPCGYSPNTPHLASVVAGNGKNNLSPLVQCTSHMCPIRIHWHVKVNYKEYWRVKVSITNFNYRMNYSDWNLVVQHPNFDNLTQLFSFNYKSLNPYGSINDTAMLWGVKFYNDFLNHVGPSGNVQSELLFRKEDMSHFSFEKGWGFPHRIYFNGDNCVMPPPDAYPWLPNAGSRQEVSLFALVMVVLAFYAHT 456
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g03107 456 PANTHER PROTEIN COBRA 7 451 IPR006918 GO:0010215|GO:0031225
Tsu08g03107 456 Pfam COBRA-like protein 53 216 IPR006918 GO:0010215|GO:0031225
Tsu08g03107 456 PANTHER COBRA-LIKE PROTEIN 7 451 - -
Tsu08g03107 456 PIRSF COBRA 2 456 IPR006918 GO:0010215|GO:0031225
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu08g03107 Tsu-Chr8 47629615 47638497 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu08g03107 1 455 COBRA Gene Family AT3G02210 71.584 0.0 687
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu08g03107 - - gmx:100783820 836.639