Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g03104 ATGGATATTTCACCATTTGATGATTTCTTCAACATTGATTGGGAAAATCAGTTTTCATACCAAAGTAACAAACTTTACATCAATGAgttcattgattttgaaaatttcaactttGATTTCAGCCTTCCACAACTTGATGAAAATCTTGAGAAAGAACCAAAACCCATCAATCTTGTTTTGCCTGAATTAGTTCATAATAATGAAAAAGATGAAAGTGTTTGTCAGAGTGCTTTTTCTGGATCTTCAGAGGAAGTTGGAAATGGGTTTgtgaagaaagagaagaaatggGAGATTCAAGATATGCCATTTGgagaaaatggtttttcttttGCTGAAACTTATGCAAAAAGTGGAAATGAAGTGGAGAATCAAGATTTTCCAAAATCATTGATATTGGCTAGTAGTAGTCTGATTAGGAAAAAGAGGTCATGTTTATTGCAATTTGATGAGATTAAGAAACATTTTGATGTTCCTATAACAATGGCTGCTAAGAAAATGAATGTTGGGGTAACCATTTTGAAGAGAAGGTGTAGGGAACTCAAAATCAATAGGTGGCCTCATAGAAAATTGAAAAGCTTGATGGTACTCATTGACAACCTTAAGGAAATGGGTTTGGAAAATGAGGTTGCAAAGTTGGAGAAGCATAAAAAGATGTTGGAGAACATTCCAGGAATGGAATTGAATGAAGAAATTAAGAAGTTAAGGCAATCATGTTTTAAAGCTAATTacaagaagagaagaacaagTTCTTTCCATCCTTGA 762 0.2992 MDISPFDDFFNIDWENQFSYQSNKLYINEFIDFENFNFDFSLPQLDENLEKEPKPINLVLPELVHNNEKDESVCQSAFSGSSEEVGNGFVKKEKKWEIQDMPFGENGFSFAETYAKSGNEVENQDFPKSLILASSSLIRKKRSCLLQFDEIKKHFDVPITMAAKKMNVGVTILKRRCRELKINRWPHRKLKSLMVLIDNLKEMGLENEVAKLEKHKKMLENIPGMELNEEIKKLRQSCFKANYKKRRTSSFHP 253
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g03104 253 Pfam RWP-RK domain 146 193 IPR003035 -
Tsu08g03104 253 Coils Coil 202 222 - -
Tsu08g03104 253 PANTHER PROTEIN RKD1-RELATED 12 248 - -
Tsu08g03104 253 ProSiteProfiles RWP-RK domain profile. 133 214 IPR003035 -
Tsu08g03104 253 PANTHER PROTEIN RKD4 12 248 IPR044607 GO:0003700
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu08g03104 Tsu-Chr8 47594124 47594956 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu08g03104 146 248 AtRKD Transcription Factor Family AT5G53040 60.194 8.64e-38 131
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF RWP-RK Tsu08g03104 RWP-RK 1.1e-20 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu08g03104 - - aprc:113850801 225.713