Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g03095 ATGCATCACCATCACCATCACACCCAATCCCCATCTCCACTAATATCAAAACCCtcaacatcatcatcagcaGTAGACTTCAGTCCACCTCTAATAGCAATGGTTGTCGTCGTCGCTGCCGCATTCGTAATCGTAACCTATTCCCGTCTCATAACTCGTCACTTATCCCCTCCCATCCACCGTCTAATCCAACGCTTCCACCGCCGTCCACCTTCCTCCTCATTAGGCGACATAGAATCCCTCCAATACGATTCAACAACCTTCGAAACACCACTAACTTACGGTTTAGACGAATCCGTTATAAAAACAATTCCATTCTTCATTTACACAACTAAATACGAACAAGAACGAGAACAAGAATCACTCCGTGATTGCGCCGTTTGTTTACTCGAATTTGAAGATCACGATTACGTTCGCACTCTTCCTCTTTGTTCTCACACTTTTCATCTTGATTGTATTGATGCTTGGCTTCGTTCACACGCTAACTGTCCTCTCTGTCGTTCTCTTCTTCTTTGTGATTCTCCTTTTAGACCTCTTATGGCTGCGAGGATTCGTCCTTCTTTTCATGATCAAACTAATGTTCTTCATATTGATACTCCTTTTCATAACTCTGTTTCACCAGTGCCGGAGATTACTCCTCATTCTCCTGCTATGAGTACGGTTGATGAAAATCGGTTTACCGGACGGCAGGATTTTCTATTGAAACGATCTTATTCGTTTGGATTTGAGAGAAGTTTACCGTCGGAGAGGATGGTAATTGATCCTGCTACAACCTCGCCGTGGCGGTACCGGAGAGGTAGCACCACCGGTTTCTGGAATAAAAGACCGTCGCCGTTTGGTTCTTTAGGGAAGTCGAGAGTGTTTTCATTCAGATACTATAGAGGAATGAAATCACCGTTCTTCCGACGGAGAGGATTTTTTCCGTTGTCGGAGTCGAGTAATCGGTACGCCGCCGACGGAGGAAGTTCATGGAGGAGGAGTAAATCAATAGCGAGTCCGATGTTTTTACGATCTTCAGCGGCGGTATTCTCGTCGAGTCGGCTAAGATGCGGTGATCCGGAGGCGTTACTTTCGCCGGAGAGATTTAACCGGCGACGATGA 1101 0.4514 MHHHHHHTQSPSPLISKPSTSSSAVDFSPPLIAMVVVVAAAFVIVTYSRLITRHLSPPIHRLIQRFHRRPPSSSLGDIESLQYDSTTFETPLTYGLDESVIKTIPFFIYTTKYEQEREQESLRDCAVCLLEFEDHDYVRTLPLCSHTFHLDCIDAWLRSHANCPLCRSLLLCDSPFRPLMAARIRPSFHDQTNVLHIDTPFHNSVSPVPEITPHSPAMSTVDENRFTGRQDFLLKRSYSFGFERSLPSERMVIDPATTSPWRYRRGSTTGFWNKRPSPFGSLGKSRVFSFRYYRGMKSPFFRRRGFFPLSESSNRYAADGGSSWRRSKSIASPMFLRSSAAVFSSSRLRCGDPEALLSPERFNRRR 366
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g03095 366 PANTHER RING-H2 FINGER PROTEIN ATL51-RELATED 6 341 IPR044675 -
Tsu08g03095 366 ProSiteProfiles Zinc finger RING-type profile. 125 167 IPR001841 -
Tsu08g03095 366 CDD RING-H2_PA-TM-RING 124 167 - -
Tsu08g03095 366 Pfam Ring finger domain 124 167 IPR001841 -
Tsu08g03095 366 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 85 171 IPR013083 -
Tsu08g03095 366 SUPERFAMILY RING/U-box 109 178 - -
Tsu08g03095 366 PANTHER TRANSCRIPTION FACTOR C2H2 FAMILY-RELATED 6 341 - -
Tsu08g03095 366 SMART ring_2 125 166 IPR001841 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu08g03095 Tsu-Chr8 47530014 47531926 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu08g03095 20 365 C3H Transcription Factor Family AT3G18930 50.521 9.88e-96 289
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu08g03095 - K19041 gmx:100806115 463.766