Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g03089 ATGGGTAAGAAAGGAAGCAGTTGGTTTTCATCGGTGAAGAAAGTTTTCAAGTCTTCTTCTAAGGATTTGCCGGTGCCGGAGAACAAGAAGGAAAAGGAAGAGAATTGGCAGCATGAAGCAGCAGAGGAGGTATCTTTGGAACATTTTCCTGCATATAGTTCACCAGATATCACCAATGAAGGAAGTACAACATCAACACCAATGACTGAAGAAATAAATCATGCTATTGCCTATGCAGTAGCAACAGCAACAGCAGCTGAAGCTGCAGTGACAGCAGCTCAAGCAGCTGCTAGAGTTGTGAGATTGGCAGGTTATGGACGTAACTATAGGGAAGAAAAGGCAACAATACTCATTCAATCATACTATAGAGGATACCTAGCTCGACGTGCACTACGTGCATTGAAGGGATTAGTGAGGCTGCAAGCACTTGTGAGGGGACATAATGTGAGGAAGCAAGCACAAATGACAATGCGATGCATGCAAGCATTGGTAAGAGTACAGGGAAGAGTAAGAGCTAGAAGACTCCAATTGACTAATGAGAAACATCATAGGACATTGGAGGAAAAACATCCCGTGACAATGTTTGACACATGTGGTTGGGACTATAGGCGCCAAAGTAGCCACAAAATTAAGGAAAATGATTTTAGGAAACATGGAACTACAATGAATAAGGACAAAGCTCTTCAATACGCTTTCAACAACCAGCAACAACAAAAGCAATATTTGCATATAGATCCAAGTGTTGATGATATTGAAAGTTTTGGCAATGAACGTGAAAGAGCTCAATTGGATTGGAATTGGTTGGAACGTTGGATGTTAACACAATCACACAATGTTAGGCCTGTAGGGTTGGGCCCACTTGGGACCCCACCATATACACCCACTGATGACATGTCTGAAGAAAAAACAGTTGAAATGGACATAGCTGCACCAAGAGACTCAATCCATGCAAACATGGGCCTAATGAATCAAGAATCTCATGATTTAAGCCCAATTGCTAAACACCACCAACGACATCACAGTGGAGGTGTACCTAGCTATATGGCACCAACCCAATCTGCAAAGGCCAAGATTCGACGTCAAGGCCCATTAAAGCATCGGGCTTCATTTGGGTCTTACTGGAACTCATCATTAAGGAGTCCTCCAAGTGGGCTGGGCTATGACTCATCTGGCTCTGGTGGTGGGGCCACTGCTGCTCATCCGATTACGAGAAGCCCAAGCCCAAAAATTAACGGCGTTCGTCTTCAATCGAAGCGGATTACGGGTGTTAGCCCAGATAATGTTGGTGTTGAGGATTGGCCAAACCATCATGGAGCTCACGCTTGGGCTAGATTTGATTGA 1341 0.4415 MGKKGSSWFSSVKKVFKSSSKDLPVPENKKEKEENWQHEAAEEVSLEHFPAYSSPDITNEGSTTSTPMTEEINHAIAYAVATATAAEAAVTAAQAAARVVRLAGYGRNYREEKATILIQSYYRGYLARRALRALKGLVRLQALVRGHNVRKQAQMTMRCMQALVRVQGRVRARRLQLTNEKHHRTLEEKHPVTMFDTCGWDYRRQSSHKIKENDFRKHGTTMNKDKALQYAFNNQQQQKQYLHIDPSVDDIESFGNERERAQLDWNWLERWMLTQSHNVRPVGLGPLGTPPYTPTDDMSEEKTVEMDIAAPRDSIHANMGLMNQESHDLSPIAKHHQRHHSGGVPSYMAPTQSAKAKIRRQGPLKHRASFGSYWNSSLRSPPSGLGYDSSGSGGGATAAHPITRSPSPKINGVRLQSKRITGVSPDNVGVEDWPNHHGAHAWARFD 446
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g03089 446 MobiDBLite consensus disorder prediction 380 411 - -
Tsu08g03089 446 Pfam IQ calmodulin-binding motif 138 153 IPR000048 GO:0005515
Tsu08g03089 446 Pfam IQ calmodulin-binding motif 112 132 IPR000048 GO:0005515
Tsu08g03089 446 ProSiteProfiles IQ motif profile. 111 139 IPR000048 GO:0005515
Tsu08g03089 446 Pfam Protein of unknown function (DUF4005) 330 367 IPR025064 -
Tsu08g03089 446 PANTHER IQ-DOMAIN 5-RELATED 1 425 - -
Tsu08g03089 446 ProSiteProfiles IQ motif profile. 135 162 IPR000048 GO:0005515
Tsu08g03089 446 Gene3D - 108 163 - -
Tsu08g03089 446 MobiDBLite consensus disorder prediction 16 39 - -
Tsu08g03089 446 SMART iq_5 133 154 IPR000048 GO:0005515
Tsu08g03089 446 SMART iq_5 110 132 IPR000048 GO:0005515
Tsu08g03089 446 MobiDBLite consensus disorder prediction 23 39 - -
Tsu08g03089 446 PANTHER IQ-DOMAIN 21 1 425 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu08g03089 Tsu-Chr8 47488957 47494303 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu08g03089 1 437 IQD Protein Family AT3G49260 45.303 7.15e-86 269
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu08g03089 - - aprc:113873497 505.368