Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g03086 ATGGATTTGGATAATATTGAGTGTGTGTCATCTTCTGATGGAATGGAAGAGGATGAGATCCATTCACATCATCACTCTGaattttcttcaacaaaacATAGAAATGGTGCCACAAATATTTTGGGTCCAAATGGTATTACTCCTGCAACAAGCGTTCATGAATTGCTTGAATGTCCTGTTTGTACTAATTCAATGTACCCTCCAATTCATCAgTGTCACAATGGCCACACGCTATGTTCCACATGCAAAACACGAGTGCATAACCGGTGTCCCACTTGTAGACAAGAGCTTGGAGATATTAGGTGTTTGGCACTAGAGAAGGTGGCCGAATCACTTGAGTTACCGTGCAAGTACTACTCCCTTGGATGTCCAGAAATCTTTCCATACTACAGCAAGCTTAAGCATGAGACAGTATGTAATTTTAGGCCATATAGTTGTCCTTATGCTGGATCAGAGTGTTCTGTTGTTGGCGATATTCCCTTCCTTGTTGCTCATTTGAGGGATGATCATAAGGTGGACATGCACACCGGATGCACATTCAACCATCGTTATGTGAAGTCAAATCCACGCGAAGTAGAGAATGCAACCTGGATGCTCACAGTATTTCACTGTTTTGGTCAATATTTCTGCCTTCATTTCGAAGCTTTTCAGCTTGGCATGGCCCCTGTTTACATGGCATTCCTTCGTTTTATGGGCGATGAAAATGATGCTCGGAACTACAGCTATAGCCTGGAAGTTGGGGCCAATGGCAGGAAACTAATTTGGGAGGGTACGCCTCGAAGTGTTCGAGATAGCCACCGTAAAGTCAGGGATAGCCATGATGGTCTCATCATTCAAAGAAATATGGCACTATTTTTCTCTGGTGGGGATAGGAAGGAGCTGAAACTTAGAGTAACAGGAAGAATTTGGAAGGAACAGAATCAAGAAAATGGAGTGTGCATACCTAATATTTGTAGCTGA 960 0.4219 MDLDNIECVSSSDGMEEDEIHSHHHSEFSSTKHRNGATNILGPNGITPATSVHELLECPVCTNSMYPPIHQCHNGHTLCSTCKTRVHNRCPTCRQELGDIRCLALEKVAESLELPCKYYSLGCPEIFPYYSKLKHETVCNFRPYSCPYAGSECSVVGDIPFLVAHLRDDHKVDMHTGCTFNHRYVKSNPREVENATWMLTVFHCFGQYFCLHFEAFQLGMAPVYMAFLRFMGDENDARNYSYSLEVGANGRKLIWEGTPRSVRDSHRKVRDSHDGLIIQRNMALFFSGGDRKELKLRVTGRIWKEQNQENGVCIPNICS 319
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g03086 319 CDD RING-HC_SIAHs 56 94 - -
Tsu08g03086 319 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 111 164 IPR013083 -
Tsu08g03086 319 ProSiteProfiles Zinc finger RING-type profile. 58 94 IPR001841 -
Tsu08g03086 319 MobiDBLite consensus disorder prediction 14 31 - -
Tsu08g03086 319 SUPERFAMILY TRAF domain-like 111 303 - -
Tsu08g03086 319 Gene3D Apoptosis, Tumor Necrosis Factor Receptor Associated Protein 2; Chain A 165 299 IPR008974 GO:0005515
Tsu08g03086 319 CDD Sina 172 300 - -
Tsu08g03086 319 PANTHER E3 UBIQUITIN PROTEIN LIGASE SIAH 1 311 - -
Tsu08g03086 319 ProSiteProfiles Zinc finger SIAH-type profile. 111 171 IPR013010 GO:0008270
Tsu08g03086 319 PANTHER E3 UBIQUITIN-PROTEIN LIGASE 1 311 - -
Tsu08g03086 319 Pfam Seven in absentia protein family 100 299 IPR018121 GO:0005737|GO:0006511|GO:0007275
Tsu08g03086 319 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 11 110 IPR013083 -
Tsu08g03086 319 SUPERFAMILY RING/U-box 50 100 - -
Tsu08g03086 319 MobiDBLite consensus disorder prediction 1 34 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu08g03086 Tsu-Chr8 47430782 47433993 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu08g03086 49 306 C3H Transcription Factor Family AT2G41980 81.008 1.14e-162 454
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu08g03086 K04506 - gmx:100810573 638.647