Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g03075 ATGGAGTATGGAAGGTTAGGACTATCCGAACCTGGAGGCTCATCTCCCTCCCCCTCCGAACCTACAATATTCATTTCCAGACCTAGATCTTCTAAgaagaaaatcatttttctttcacTACTTGCAGTGTTACTAATAGTTGTCTCCGCCGTCTCTGCCGCAATGCTCACCGGAATACATTACCGAACAACCGAACCAAAAAATCCAACTCTAAAACGTAATCCAACAcaatcaatttcaaaaacatgtAGCAAAACACGTTTTCCATCACTCTGTGAAAATTATCTTCTCGATTTTCTTGGATCCGATATTGCATCGGAAAAAGACTTAATCCACATTTCACTAAACATGACACTACAACACATTTCAAAAGCACTTTATTCCTCCGCCGCTATCTCATCCACCATCGGCATGAATCCTCGCATCCGCGCCGCTTATATAGATTGTCTTGAACTTCTAGACGATTCCGTCGATGCTCTTTCTCGTTCACTCACTTCAATTGTACCTTCAACTTCCTCCGGAGCAGTTAAGCCACTTACAGCTTCCTCAACCGACGATGTACTCACGTGGCTTAGCGCCGCGCTAACTAACCAAGACACGTGTGCTGACGGTTTTTCCGACGTTTCCGGAGCTGTAAAAGATCAGATGGCGAGTAACATAAAGGATTTATCAGAGCTTGTGAGTAATTGTTTAGCTATTTTCTCTGCTTCCGGTGCCGGAGATGATTTCTCCGGTGTTCCGATAGGGAATAGAAGACGGTTAATGACAATGCAAGAGGATGAGAATGATAATGAAGATGAGTTTCCGGTGTGGTTGAAAAAGCGTGAGAGGAGGTTGTTGAGTTTACCGATAACGGCGATACAAGCGGATGTGGTTGTTTCTAAAGACGGTAACGGAACGGTGAAAACTATTGAAGAAGCACTTAAGAAGATACCTGAGTATGGTAACCGACGGTTCATTATCTATATTAGACAAGGAagGTACGAAGAGGACAATTTAAAGATAGGAAGGAAGAAAACTAATGTCATGATCATAGGAGACGGAAAGGGAAAGACAGTGATCACAGGTGGCAAAAATGTTTTGCAAAACTTGACCACATTTCACACAGCTTCCTTTGCTGCTAGTGGACCAGGTTTCATTGCAAGAGATGTAACATTTGAGAACTATGCCGGACCAGCGAAACACCAAGCAGTGGCTCTCCGTGTTGGATCGGATCATGCGGTGGTGTACCGTTGTAACATCATAGGATACCAAGATACAATGTATGCGCACTCAAACCGTCAATTCTACCGTGAATGCGACATTTATGGTACGGTAGACTTTATATTTGGCAATGCTGCAgttgtttttcaaaattgtaGCCTCTATGCACGCAAGCCCATGCCCCAACAAAAAAACACCATCACGGCCCAAAATAGAAAAGACCCGAATCAAAACACGGGTATATCCATTCACAATTGTCGGATCCTTGCCACGTCCGATCTACAAGCATCTAAGGGTAGCTATCCAACGTATTTGGGCCGTCCGTGGAAATTATACTCTAGAACGGtatacatgttatcatacatggGAGATCATTTGCATCCGCGTGGATGGTTAGAGTGGAATACAACTTTTGCTCTAGACACATTGTATTACGGTGAGTACATGAATTATGGCCCAGGCGGAGCTATTGGACAACGGGTATCTTGGCCCGGGTATCGGGTTATTACATCCACCGTGGAAGCAAATAGATTCACAGTGTCCCAATTCATATCGGGATCGACTTGGATACCGTCTACTGGGGTTGCATTTGTAGCTGGCTTATCCACCTGA 1815 0.4264 MEYGRLGLSEPGGSSPSPSEPTIFISRPRSSKKKIIFLSLLAVLLIVVSAVSAAMLTGIHYRTTEPKNPTLKRNPTQSISKTCSKTRFPSLCENYLLDFLGSDIASEKDLIHISLNMTLQHISKALYSSAAISSTIGMNPRIRAAYIDCLELLDDSVDALSRSLTSIVPSTSSGAVKPLTASSTDDVLTWLSAALTNQDTCADGFSDVSGAVKDQMASNIKDLSELVSNCLAIFSASGAGDDFSGVPIGNRRRLMTMQEDENDNEDEFPVWLKKRERRLLSLPITAIQADVVVSKDGNGTVKTIEEALKKIPEYGNRRFIIYIRQGRYEEDNLKIGRKKTNVMIIGDGKGKTVITGGKNVLQNLTTFHTASFAASGPGFIARDVTFENYAGPAKHQAVALRVGSDHAVVYRCNIIGYQDTMYAHSNRQFYRECDIYGTVDFIFGNAAVVFQNCSLYARKPMPQQKNTITAQNRKDPNQNTGISIHNCRILATSDLQASKGSYPTYLGRPWKLYSRTVYMLSYMGDHLHPRGWLEWNTTFALDTLYYGEYMNYGPGGAIGQRVSWPGYRVITSTVEANRFTVSQFISGSTWIPSTGVAFVAGLST 604
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g03075 604 PANTHER PECTINESTERASE 28 602 - -
Tsu08g03075 604 ProSitePatterns Pectinesterase signature 2. 435 444 IPR033131 -
Tsu08g03075 604 SUPERFAMILY Pectin lyase-like 285 601 IPR011050 -
Tsu08g03075 604 Pfam Plant invertase/pectin methylesterase inhibitor 78 233 IPR006501 GO:0004857
Tsu08g03075 604 PANTHER PECTINESTERASE 28 602 - -
Tsu08g03075 604 CDD PMEI-like_3 83 236 - -
Tsu08g03075 604 Gene3D Invertase/pectin methylesterase inhibitor family protein 75 236 IPR035513 -
Tsu08g03075 604 MobiDBLite consensus disorder prediction 1 24 - -
Tsu08g03075 604 SMART PMEI_2 74 233 IPR006501 GO:0004857
Tsu08g03075 604 Pfam Pectinesterase 290 587 IPR000070 GO:0030599|GO:0042545
Tsu08g03075 604 Gene3D - 284 602 IPR012334 -
Tsu08g03075 604 TIGRFAM PME_inhib: pectinesterase inhibitor domain 56 234 IPR006501 GO:0004857
Tsu08g03075 604 SUPERFAMILY Plant invertase/pectin methylesterase inhibitor 78 235 IPR035513 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu08g03075 Tsu-Chr8 47273356 47277562 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu08g03075 1 603 Carbohydrate Esterase AT5G53370 63.861 0.0 796
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu08g03075 - - gmx:100776752 865.144