Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g03066 ATGATTATCAAGCGGAACTTGAAATCTCAAATGCCGAGTTTGAAACGGTGTAAACTCGCTGACTCAGTTGAAGAAGATAACGAGTGTTCTAATTCTAATGCTAGTAAGAAGAGAAAAACTAGCGGTTATTATTATCCTTTGGACCTTCTTGGTGATGTTGCCGCTGCTTTAATTCCGGCGAGTTTTCACGGTTTACTTAGTTCCGGTGTATCGGAGAAGGGATTGTCCACATCATGGTGCACACAAGTTCCGTGCTCCCCTGGTGAAGTTGAATCAAATTCTAAAGAAGAAATGGTTCCGGTGAAGAAAAAACAGGTTCAGCGAGCCCGACCGCCACTTGTTCGAACTTCAAGAGGGCGAGTTCAGGTTCTTCCTTCGCGGTTTAATGATTCTGTTCTTGATAATTGGAAGAAGGATAGTAAGACTAGCTTGCGTGATTGTGAAGTTGTAGATGAATTTGAATGCAAGAAGGACAGGGTAGTATCGAAAATTTGCATCAACAATGTTAAAAAAGGGCGAAACTATGAGAAAATCGGTTATAAGGAACGAATACTTTCGGCATTGtatgaggatgatgatgttgatgttggTGTGAGTGTGAGGCATAGGAGTTTCGGTAGAAGGAAGGATTCAGCTTtggatgaagatgaagttgatTGGATGATGGATTGTGATGATAATGGAGAAAGGAAAGATGGGTTGTACGGACCAGAAGATTTTTATGCAGGTGATATGGTTTGGGCCAAAGCTGGAAGGAAGGAACCTTTTTGGCCAGCTGTTGTTATTGATCCTATGAAACAAGCACCTGAGCTGGTTCTTAGGTCTTTTGTAGCTGATGCTGCTTGTGTCATGTTTCTTGGCAATGCGGGGAATGAAAATCAAAGGGACTACGCATGGGTGAAGCATGGCGTGATCTTTCCATTTCTGGATTATGTAGACAGGTTTCAAGAGCAGCCTGAATTGAGTAACTATAGTCCCTCTGATTTCCAAATGGCAATAGAGGAAGCATTTTTAGCAGACCAAGGCTTTACAGAGAAGTTGATAGATGATATAAATGCAGCAGCTGGTGACACTGGTTATGATGATACTATTCTGAAATCTGAGGTCCGTGGTTCAAACAAGTATGGAGGAACAGGAAAGCATTTTCTTAGACAGGATTCATTTGATAAGAAAGACGCGAGATCATGTGAAGCCTGCGGATTGGATCTTCCTTACAAGACGCCAAAGAAAACTAAGGGTTTGAATCCTAATGGTCAATTACTATGTAAAACATGTGCAAGGTTAACGAAATTAAAACATTATTGTGGCATATGCAAGAAAGTTTGGAATCATTCGGATAGTGGAAGCTGGGTGCGCTGTGATGGATGTAAAGTGTGGGTGCACGCCGAATGTGACCAAATTTCTAGAAACCATTTCAAGAATCTTGAAAGCACCGATTATTTCTGCCCTACGTGCAGAGGCAAGTTTGACTTTGAGTTATCTGATTCAGAAAAAACGACAAAGACAAGAGTCAAATCGAACAGAAACAGTGGCCAGCTAGTGCTTTCAAATAAGGTCGATGTTCTCTGCAATGGTGTGGAAGGCATATATTTTCCAAGCCTACACTTAGTTATATGCAAGTGTGGTTTTTGTGGGCCAGAAAAGCAAGCGCTTAGCGAATGGGAACGGCACACAGGttccaaattaagaaattggaaaaCAAGTATTACCGTGAAAGACTCTAGGCTACCTCTGGAACAATGGATGCTGCAGGTTGCAGAATCTCATGCTAATTCTCTAGTTTCTGTCAAACCTAAAAAACCTTCTTTAAAGGAAAGGAAGCACAAGTTGCTTACCTTCTTGAAAGAGAGGTACGAACCTGTCGATGCTAAGTGGACTACGGAGCGTTGTGCTGTTTGTAGATGGGTTGAAGACTGGGACTACAATAAAATTATCATTTGCATCAGATGTCAAATAGCTGTTCACCAAGAATGCTATGGAGCAAAAAATGTTAAAGACTTTACATCTTGGGTCTGTAAGGCCTGTGAAACACCTGACATCAAGCGGGAGTGTTGTCTTTGTCCTGTAAAAGGTGGTGCTCTAAAGCCGACCGATATTCACACATTATGGGTTCATGTCACCTGTGCTTGGTTTCGACCTGAAGTCTCGTTTGCTAGTGATGAGACGATGGAACCTGCTTTGGGTATTCTTAGTATTCCATCAAATTCTTTTGTGAAGATTTGTGTTATTTGCAAGCAAATCCATGGTTCCTGCACACAGTGTGTCAGATGTTCCACTTATTTCCATGCCATGTGTGCATCAAGGGCCGGTTACCGAATGGAGTTGCATTGCTTGAAGAAAAATGGAAAGCAGACAACAAAAATGGTTTCTTACTGTGCTTACCATAGGGCTCCAAATCCCGACAATGTTTTGATTTTGCAAACCCCTCTCGGGGTAATTTCAACCAAAAGCCTtctccaaaagaaaaaaactggATCAAGATTAATCTCATCTACCagaacaaagaaagaagacaCTCCTATTGATATCCCTGAGCATGACTCGTTCTCTGCAGCTAGGTGTCGTATCTTTAAAAGAACAAATCATATGAAAAAGAGAGCAGCAGATGAAGCCATTTATCATAAAGCGAGGGGTCACTGCCACCATCCTTTAGATGCAATACAGAGTTTGAATACATACAGAGCAGTAGTAGAGGAGACTCAAGCTTTCTCTTCTTTCAGAGAACGCCTTTACCATTTGCAGAGAACCGAAAATGAACGGGTTTGCTTTGGTAGATCTGGCATACATGGATGGGGCCTCTTTTCACGCAGGAATATTCAAGAAGGAGAAATGGTTCTTGAATATCGTGGCGAACAAGTAAGACGTAGTATTGCTGATCTGAGGGAGGCGCGCTATAGAGCAGAAGGAAAAGATTGCTACCTGTTTAAAATAAGTGAAGAAGTGGTGGTAGATGCCACTGATAAAGGGAATATAGCACGGCTAATAAATCATTCTTGTATGCCAAATTGCTATGCAAGGATCATGAGTGTGGGCGATGATGAGAGTAGGATTGTACTCATCGCTAAGACTAACGTAGCTGCTGGTGACGAGCTAACctACGACTACTTATTCGATCCTGATGAGCCAGATGAATTTAAAGTCCCTTGCATGTGTAAAGCACCAAATTGCAGGAAATTCATGAATTAG 3186 0.4058 MIIKRNLKSQMPSLKRCKLADSVEEDNECSNSNASKKRKTSGYYYPLDLLGDVAAALIPASFHGLLSSGVSEKGLSTSWCTQVPCSPGEVESNSKEEMVPVKKKQVQRARPPLVRTSRGRVQVLPSRFNDSVLDNWKKDSKTSLRDCEVVDEFECKKDRVVSKICINNVKKGRNYEKIGYKERILSALYEDDDVDVGVSVRHRSFGRRKDSALDEDEVDWMMDCDDNGERKDGLYGPEDFYAGDMVWAKAGRKEPFWPAVVIDPMKQAPELVLRSFVADAACVMFLGNAGNENQRDYAWVKHGVIFPFLDYVDRFQEQPELSNYSPSDFQMAIEEAFLADQGFTEKLIDDINAAAGDTGYDDTILKSEVRGSNKYGGTGKHFLRQDSFDKKDARSCEACGLDLPYKTPKKTKGLNPNGQLLCKTCARLTKLKHYCGICKKVWNHSDSGSWVRCDGCKVWVHAECDQISRNHFKNLESTDYFCPTCRGKFDFELSDSEKTTKTRVKSNRNSGQLVLSNKVDVLCNGVEGIYFPSLHLVICKCGFCGPEKQALSEWERHTGSKLRNWKTSITVKDSRLPLEQWMLQVAESHANSLVSVKPKKPSLKERKHKLLTFLKERYEPVDAKWTTERCAVCRWVEDWDYNKIIICIRCQIAVHQECYGAKNVKDFTSWVCKACETPDIKRECCLCPVKGGALKPTDIHTLWVHVTCAWFRPEVSFASDETMEPALGILSIPSNSFVKICVICKQIHGSCTQCVRCSTYFHAMCASRAGYRMELHCLKKNGKQTTKMVSYCAYHRAPNPDNVLILQTPLGVISTKSLLQKKKTGSRLISSTRTKKEDTPIDIPEHDSFSAARCRIFKRTNHMKKRAADEAIYHKARGHCHHPLDAIQSLNTYRAVVEETQAFSSFRERLYHLQRTENERVCFGRSGIHGWGLFSRRNIQEGEMVLEYRGEQVRRSIADLREARYRAEGKDCYLFKISEEVVVDATDKGNIARLINHSCMPNCYARIMSVGDDESRIVLIAKTNVAAGDELTYDYLFDPDEPDEFKVPCMCKAPNCRKFMN 1061
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g03066 1061 CDD PHD_TCF19_like 435 485 - -
Tsu08g03066 1061 Gene3D SET domain 820 1061 IPR046341 -
Tsu08g03066 1061 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 617 678 IPR013083 -
Tsu08g03066 1061 ProSiteProfiles Histone-lysine N-methyltransferase (EC 2.1.1.43) family profile. 3 1061 IPR025780 -
Tsu08g03066 1061 Pfam PHD-finger 434 486 IPR019787 -
Tsu08g03066 1061 Pfam PWWP domain 243 336 IPR000313 -
Tsu08g03066 1061 Pfam SET domain 930 1035 IPR001214 GO:0005515
Tsu08g03066 1061 SMART PHD_3 629 676 IPR001965 -
Tsu08g03066 1061 SMART PHD_3 740 796 IPR001965 -
Tsu08g03066 1061 SMART PHD_3 434 486 IPR001965 -
Tsu08g03066 1061 SUPERFAMILY FYVE/PHD zinc finger 627 692 IPR011011 -
Tsu08g03066 1061 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 679 798 IPR013083 -
Tsu08g03066 1061 ProSitePatterns Zinc finger PHD-type signature. 630 675 IPR019786 -
Tsu08g03066 1061 ProSiteProfiles PWWP domain profile. 242 311 IPR000313 -
Tsu08g03066 1061 SMART set_7 919 1042 IPR001214 GO:0005515
Tsu08g03066 1061 CDD ePHD_ATX3_4_5_like 684 795 IPR041955 -
Tsu08g03066 1061 ProSiteProfiles SET domain profile. 919 1036 IPR001214 GO:0005515
Tsu08g03066 1061 PANTHER PHD FINGER PROTEINS 1 1061 - -
Tsu08g03066 1061 Pfam PHD-finger 642 676 - -
Tsu08g03066 1061 CDD SET_SETD1-like 906 1057 - -
Tsu08g03066 1061 ProSiteProfiles Zinc finger PHD-type profile. 432 488 IPR019787 -
Tsu08g03066 1061 Pfam PHD-zinc-finger like domain 683 795 - -
Tsu08g03066 1061 ProSiteProfiles Zinc finger PHD-type profile. 627 678 IPR019787 -
Tsu08g03066 1061 MobiDBLite consensus disorder prediction 94 114 - -
Tsu08g03066 1061 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 429 489 IPR013083 -
Tsu08g03066 1061 ProSiteProfiles Extended PHD (ePHD) domain profile. 681 796 IPR034732 -
Tsu08g03066 1061 SUPERFAMILY SET domain 909 1061 IPR046341 -
Tsu08g03066 1061 Gene3D - 237 343 - -
Tsu08g03066 1061 SUPERFAMILY FYVE/PHD zinc finger 434 489 IPR011011 -
Tsu08g03066 1061 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE ATX4 1 1061 - -
Tsu08g03066 1061 SUPERFAMILY Tudor/PWWP/MBT 235 339 - -
Tsu08g03066 1061 CDD PHD_ATX3_4_5_like 629 675 IPR042011 -
Tsu08g03066 1061 ProSiteProfiles Post-SET domain profile. 1045 1061 IPR003616 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu08g03066 Tsu-Chr8 47172454 47180535 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu08g03066 630 795 C2H2 Transcription Factor Family AT3G14740 34.104 3.44e-20 91.7
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Tsu08g03066 zf-HC5HC2H_2 3.3e-27 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu08g03066 - - aprc:113853254 1731.84