Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g03062 ATGTCATCAACTTTGCTGGAAGTGACTCGGTCGGCGCACGAGGAGGTGGAGCGGCTGGAGAGATTGATAGTGAAGGATCTCCAGAATGTGCCAACCTCCAACAAGGACCGTTTGTTTCAGAGTCACCGTGTTAGAAATATGATTGACACCATTAGCTCGACCACTGAAAGGCTGGTTGAGATATATGACGACAAAGACAATGCAAGGAAGGATGAGATTGCTGCACTGGGAGGACAGACTGCTACTGGAATTAATGTTTTTAGTGCCTTCTATGATAGACTCAAAGAGACACGAGAGTATCACAGAAAGCACCCAGTTGCACGTGTTGTTGATGCCAATGACGATTTTGAAGCCCTTCTTAAAGAGGAACCTCAAATTGAGTTCAGCGGAGAgGAAGCTTTTGGTCGATATTTAGACATGCATGAATTATATCAACAGTATGTCAATTCTAAGTTTGGAGAGCCAATTGAGTATTCTGCATACCTTGATATCTTTTCTGAAACAGATAAGATTCCACGCAAAATGAAAACAACCAGGCAGTACAGGGAGTACTTGGAGAATCTTTTGGAGTATCTGATATATTTTTTCCAGCGGACAGAACCCCTGAAAGATCTTGATCGAATCTTTTCAAAGGTGATAACTGAGTTTGAAGAAAATTGGGCTACTGGAAAGGTACTGGGATGGGAGAATGTCAATCAGGAGAATGGACATGTACCTACTCAGCACACTGCAATTGATCTTGATTATTACAGTACAGTTGAAGAGCTTATGGAAGTGGGTCCTGAAAGGTTAAAGGAGGCGCTGGCTGCATTGGGACTTAAGACTGGTGGCACTGTTCAGCAACGTGCAGAGAGACTTTTCCTCACAAAGCATACTCCTCTTGAAAAGTTGGACAAGAAGCATTTTGCCAAAGGGGCGCGTGGTTTAGAGAAAAACGGGGTGGCTTCTGCTCCACAAGAAggaaatttaaaagaaattgcATTAATGGAGGCCAAACTGAATAAACTGTGTGATTTGTTAGATGAGACAATTCTTCGAACAAAAGACAATGTTGTAAAGAAGCAAGCCCTAACATATGAGGAAATTGCAGCAGAACGCGAGGAGGAAGAGACACAAGAGGACTCTGAAAGCGAAGATGATGAGCAGCAGATTTATAATCCCTTAAAATTACCAATGGGATGGGATGGGAAGCCCATACCTTACTGGCTGTATAAGCTACATGGCCTGGGTCAGGAATTTAAGTGTGAGATATGTGGGAACTACAGTTATTGGGGGCGTCGTGCTTTTGAACGACATTTTAAAGAATGGCGTCACCAACATGGGATGCGGTGCCTTGGTATACCAAATACAAAGAACTTCAATGAAATCACATCAATTGAGGAAGCGAAGGAGCTCTGGAAGAAGATACAGCAGAGACAAGGAGTGAACAAGTGGCGCCCAGATCTAGAGGAAGAGTACGAAGACAAAGAAGGCAACATCTATAATAAGAAGACATACACTGATTTACAGCGCCAGGGACTGATATGA 1527 0.4276 MSSTLLEVTRSAHEEVERLERLIVKDLQNVPTSNKDRLFQSHRVRNMIDTISSTTERLVEIYDDKDNARKDEIAALGGQTATGINVFSAFYDRLKETREYHRKHPVARVVDANDDFEALLKEEPQIEFSGEEAFGRYLDMHELYQQYVNSKFGEPIEYSAYLDIFSETDKIPRKMKTTRQYREYLENLLEYLIYFFQRTEPLKDLDRIFSKVITEFEENWATGKVLGWENVNQENGHVPTQHTAIDLDYYSTVEELMEVGPERLKEALAALGLKTGGTVQQRAERLFLTKHTPLEKLDKKHFAKGARGLEKNGVASAPQEGNLKEIALMEAKLNKLCDLLDETILRTKDNVVKKQALTYEEIAAEREEEETQEDSESEDDEQQIYNPLKLPMGWDGKPIPYWLYKLHGLGQEFKCEICGNYSYWGRRAFERHFKEWRHQHGMRCLGIPNTKNFNEITSIEEAKELWKKIQQRQGVNKWRPDLEEEYEDKEGNIYNKKTYTDLQRQGLI 508
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g03062 508 Pfam Splicing factor SF3a60 binding domain 81 105 IPR021966 -
Tsu08g03062 508 PANTHER SPLICING FACTOR SF3A-RELATED 1 508 - -
Tsu08g03062 508 ProSiteProfiles Zinc finger matrin-type profile. 413 444 IPR000690 GO:0003676|GO:0005634|GO:0008270
Tsu08g03062 508 Pfam SF3a60/Prp9 C-terminal 389 508 IPR024598 GO:0000398|GO:0003723|GO:0005681
Tsu08g03062 508 Pfam Pre-mRNA-splicing factor SF3A3, of SF3a complex, Prp9 127 176 IPR031774 -
Tsu08g03062 508 Pfam Replication stress response SDE2 C-terminal 224 304 - -
Tsu08g03062 508 PANTHER BNAA03G01920D PROTEIN 1 508 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu08g03062 Tsu-Chr8 47107969 47117753 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu08g03062 1 508 C2H2 Transcription Factor Family AT5G06160 75.049 0.0 757
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu08g03062 K12827 - gmx:100815393 896.345