Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g03060 ATGAACTTTCCCAATCCCATACTCATCCTAATTTGTTTCCTTTTCCTCTTCAACCttaatcaaacaaatatagTGGCACAAGCAACCATAGAAACATGTTTAGACACTGTTTGCCACACTAATCAACCACTAATCCGATTCCCATTCCATATAGAAGGAAAACAAGCTAAGACATGTGGATATCAAGGATTCAAAGTATCAtgcaatgaaaatgaaaaaacccAAACACTTCTCAATCTACCTTATATGGAAAAactcaaaatccaaaaaataaactatGTCAAACAAGAACTTTTGGCGAATGATCCCAATAATTGTCTTCCAAAACAACTTCTCTCTTTTAACCTCTCCTCTTCTCCATTTGGTGCTGTTTACTATCAACAATTTACCTTTTTTAACTGCTCCTTTAACTTGGAATACCTTACTTCTAGGTACAAACCAATAGCTTGTCTTAGTGATTTTTCCAAATATGTGGTTTTCGCAACGCCTTCTCTAAGTGTTTTTGTGCACTTGTCGTCTATTTGCGATTTGGTTGACACCGTGAATGTGCCAGTTAAATTGCCGTTTTTTGATCAAGTGTTGTCGTCTAAACTAGACGATGACCTTCGATTGTCGTGGAATTCGCCGGCATGTGCTAGGTGTGAGTCTCATGGTGGACGATGTGGCTTTCAAGTTAACTCTACTTTTGAAATTGGTTGTTACAATGTCCCTCCACGACAAGGGATTTCTCGTGGTGCAAGTTATGCCATAGCTATATGTGTAGGGGTGCCATCTTTGTTGTGCTTCATTTCACTGTTAAGCTGGATATGCAGCAAGCTTAGATTTGGGACTCATGGTTGGGCTTGGGCCTGGGCCCATGACACGGTGGCAGATTTTGAGGCTCTTCTTGATCCACAACAATACACCAACATTTCAGGTCTTGATAAACCTACAATTGAATCTTACCGAAAAATGGTTATAGGTGATATCATACACTTACCTAAACCTAATGGTAAGACATGCCCTATATGTTTGTCAGATTATATGCCTAAAGAAACAGTGAAAACTATGCCTGAATGTGAACATTGTTTTCATGCACAATGCATCGATGAATGGCTTCCATTGAATGCCTCATGTCCAATTTGTCGAACTTCTCCTACATGTGTACCATCACAAAATCTAGCTCAATCTTGA 1173 0.376 MNFPNPILILICFLFLFNLNQTNIVAQATIETCLDTVCHTNQPLIRFPFHIEGKQAKTCGYQGFKVSCNENEKTQTLLNLPYMEKLKIQKINYVKQELLANDPNNCLPKQLLSFNLSSSPFGAVYYQQFTFFNCSFNLEYLTSRYKPIACLSDFSKYVVFATPSLSVFVHLSSICDLVDTVNVPVKLPFFDQVLSSKLDDDLRLSWNSPACARCESHGGRCGFQVNSTFEIGCYNVPPRQGISRGASYAIAICVGVPSLLCFISLLSWICSKLRFGTHGWAWAWAHDTVADFEALLDPQQYTNISGLDKPTIESYRKMVIGDIIHLPKPNGKTCPICLSDYMPKETVKTMPECEHCFHAQCIDEWLPLNASCPICRTSPTCVPSQNLAQS 390
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g03060 390 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 297 381 IPR013083 -
Tsu08g03060 390 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 10 385 - -
Tsu08g03060 390 Pfam Wall-associated receptor kinase C-terminal 191 234 IPR032872 -
Tsu08g03060 390 SMART ring_2 334 375 IPR001841 -
Tsu08g03060 390 Pfam Wall-associated receptor kinase galacturonan-binding 33 100 IPR025287 GO:0030247
Tsu08g03060 390 Pfam Ring finger domain 333 376 IPR001841 -
Tsu08g03060 390 ProSiteProfiles Zinc finger RING-type profile. 334 376 IPR001841 -
Tsu08g03060 390 PANTHER RING/U-BOX SUPERFAMILY PROTEIN 10 385 - -
Tsu08g03060 390 SUPERFAMILY RING/U-box 333 380 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu08g03060 Tsu-Chr8 47101989 47104446 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu08g03060 31 380 C3H Transcription Factor Family AT2G46495 34.746 1.55e-64 207
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu08g03060 - - vun:114163980 479.174