Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g03039 ATGGTATGCGGCAGGTGTATCAGTTCTATTTTTCTTCGAGCTACAAAGAGATTGCAATTCAATCACGTTGTTGTTGGAAGAAATTGTTTAACAACAAGAGTTCATACAAATCCACAATTTctagcttattttcataatcgcGTTTCTAATAGATACATAGGGATGATGGTTGATACAGGTTCTATGTCAACAAGGGCTGGTCCCTCTGTCGATATGGTTTCGCAGAAAGATGATGATGCTGCTCGTTCTGGTTTTGTTACTGGTGGATGGAAAAgTGAAGATGAAAAACTTAGCTGCGGGTTTTCAAGCTTTAGGGGGAAGAGAGTGACCATGGAGGATTTCTATGATATTAAGACATCAATTATTGATGGTCGTTCAGTGTGCTTATTTGGAATATTTGATGGTCATGGCGGTTCTCGTGCTGCTGAGTATTTGAAGGATCATTTATTTGAGAATCTCATGAAGCATCCAAAGTTTTTGACGGATACCAAATTGGCTATAAGCGAAACATATCAGCAGACTGATGCTGCGTTTCTGGACTCTGAAAAAGATAATTTCCGGGACGACGGTTCTACTGCTTCAACCGCTGTTTTGGTTGATAACCATCTTTTTGTTGCCAATGTTGGAGATTCTAGAACTGTAATATCAACAGCTGGAAAAGCAATTGCTCTCTCTGAGGATCATAAACCTAATAGAAGTGACGAGCGGAAGAGAATTGAGAATGCTGGGGGTGTTGTCATGTGGGCAGGTACTTGGAGGGTTGGAGGGGTGCTAGCAATGTCTCGTGCATTTGGCAACCGTATGCTGAAGCCATTTGTTGTAGCAGAACCTGAAATCCAGGACCAGGTGATAGATGAAAACACTGAGGTGCTTGTTCTTGCAAGTGATGGAGTCTGGGATGTAGTACAGAATGAGGATGCTGTTTCTCTTGCACGTGCGGAAGATGCAGCCGAGGTAGCTGCTCGTAAGTTAACAGAAGCCGCTTTTAATCGTGGCAGTGCAGATAACATTACTTGCATTGTGGTACGATTCAATCATGAAAAAAGACCCCCAGCTAATCCTGATAAAGCCGGTCCAGCTAGCAGTCAGCAGAAGTAG 1098 0.4199 MVCGRCISSIFLRATKRLQFNHVVVGRNCLTTRVHTNPQFLAYFHNRVSNRYIGMMVDTGSMSTRAGPSVDMVSQKDDDAARSGFVTGGWKSEDEKLSCGFSSFRGKRVTMEDFYDIKTSIIDGRSVCLFGIFDGHGGSRAAEYLKDHLFENLMKHPKFLTDTKLAISETYQQTDAAFLDSEKDNFRDDGSTASTAVLVDNHLFVANVGDSRTVISTAGKAIALSEDHKPNRSDERKRIENAGGVVMWAGTWRVGGVLAMSRAFGNRMLKPFVVAEPEIQDQVIDENTEVLVLASDGVWDVVQNEDAVSLARAEDAAEVAARKLTEAAFNRGSADNITCIVVRFNHEKRPPANPDKAGPASSQQK 365
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g03039 365 ProSiteProfiles PPM-type phosphatase domain profile. 98 344 IPR001932 -
Tsu08g03039 365 PANTHER PROTEIN PHOSPHATASE 2C 52-RELATED 48 350 - -
Tsu08g03039 365 SMART PP2C_4 88 342 IPR001932 -
Tsu08g03039 365 Gene3D - 89 351 IPR036457 -
Tsu08g03039 365 ProSitePatterns PPM-type phosphatase domain signature. 129 137 IPR000222 GO:0043169
Tsu08g03039 365 PANTHER ALPHABET, ISOFORM E-RELATED 48 350 - -
Tsu08g03039 365 SUPERFAMILY PP2C-like 95 346 IPR036457 -
Tsu08g03039 365 CDD PP2Cc 98 344 IPR001932 -
Tsu08g03039 365 Pfam Protein phosphatase 2C 99 337 IPR001932 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu08g03039 Tsu-Chr8 46904800 46911686 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu08g03039 1 348 PP2C-type Phosphatase Gene Family AT5G53140 65.278 3.84e-163 461
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu08g03039 K17506 - gmx:100805795 514.612