Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g03033 ATGAAACATATGATTTTTCTTCTCGTCACTTTCAAGATTATAAAGAAGAAGCTGAATAAGCTAAGAGAGAGTATGGGGTTTCAAAAAACACATAACACTAAACGGGTAACACAGCCTAATTTGAAGGGAAATGAGGATTTGAGGAATGCTCAAGAACACTCTTTAATTCCAAAAAGGGCACTAAATTTCATTCCCTCTAGCTATGATTCTTGGCTGGTAAAGCACCCCTCTGCATTGAACTCATTTGATAGATTGATGAAAGCTGCCAATGGGAAGAAGATAGTTGTATTTTTAGATTATGATGGTACCTTATCACCTATTGTAAATGATCCTGATCGTGCTTTCATGTCTGATGAGATGCGGGCGGCAGTATATGAAGTTGCTACTTATTTTCCAACAGCAATAATTAGTGGAAGAAGTAGAGAGAagGTAAAAGATTTTGTGaagttaaataatttatattatgcTGGAAGTCATGGTATGGACATAATGGCACCATCTGGACCAATTAGATCTTCTGATGGCAACCAATGTGACAACACTACTCTTGACACAAATGGCAATGAAGTTCCATTTCAACCTGCCAAGAAGTTTTTGCCTGCAATTCAAGAGATACTAAGAAGATTAGAGAATGTAATAAAGGACATAGAAGGTGCAAAAATAGAAGACAATGGATTCTGCATCTCAGTTCATTTCAGGCAGGTTCATGAAAagGATTATAATGTTTTGGAAGAGAAAGTGAAGTCTGTGATTGGAAAAAATCCATTGTTCTACTTGACTGAGGGTAAAAAGGTTTTGGAAATAAGGCCATCGATCGAATGGAACAAAGGAAATGCTGTAGAATATTTTCTCGACACATTAGGATTAAGCAGTTCCAGCAATTTCCTTCCTGTGTATATTGGCGACGATAAAACTGATGAAGATGCTTTTAAGGTTATACAAAAAAGAGGGCAAGGTTATCCTATTGTAGTGTCTTCAACTCCAAGAGAAACAAATGCTTCGTACTCTTTACGCGCCCCATCAGAAGTACTAATCTTCTTGTCAAGGCTAGCAAAATGGCGAAAGACATGCCTCTAA 1077 0.3668 MKHMIFLLVTFKIIKKKLNKLRESMGFQKTHNTKRVTQPNLKGNEDLRNAQEHSLIPKRALNFIPSSYDSWLVKHPSALNSFDRLMKAANGKKIVVFLDYDGTLSPIVNDPDRAFMSDEMRAAVYEVATYFPTAIISGRSREKVKDFVKLNNLYYAGSHGMDIMAPSGPIRSSDGNQCDNTTLDTNGNEVPFQPAKKFLPAIQEILRRLENVIKDIEGAKIEDNGFCISVHFRQVHEKDYNVLEEKVKSVIGKNPLFYLTEGKKVLEIRPSIEWNKGNAVEYFLDTLGLSSSSNFLPVYIGDDKTDEDAFKVIQKRGQGYPIVVSSTPRETNASYSLRAPSEVLIFLSRLAKWRKTCL 358
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g03033 358 PANTHER TREHALOSE 6-PHOSPHATE PHOSPHATASE 36 356 IPR044651 GO:0004805|GO:0005992
Tsu08g03033 358 TIGRFAM T6PP: trehalose-phosphatase 91 352 IPR003337 GO:0003824|GO:0005992
Tsu08g03033 358 Coils Coil 202 222 - -
Tsu08g03033 358 SUPERFAMILY HAD-like 95 354 IPR036412 -
Tsu08g03033 358 PANTHER TREHALOSE 6-PHOSPHATE PHOSPHATASE 36 356 - -
Tsu08g03033 358 Pfam Trehalose-phosphatase 97 340 IPR003337 GO:0003824|GO:0005992
Tsu08g03033 358 CDD HAD_TPP 95 343 - -
Tsu08g03033 358 TIGRFAM HAD-SF-IIB: HAD hydrolase, family IIB 96 314 IPR006379 -
Tsu08g03033 358 Gene3D - 183 357 IPR023214 -
Tsu08g03033 358 Gene3D - 94 175 IPR023214 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu08g03033 Tsu-Chr8 46803540 46815497 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu08g03033 92 351 Trehalose Biosynthesis Gene Families AT4G17770 25.000 6.54e-07 49.3
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu08g03033 K01087 - gmx:100809194 542.732