Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g03020 ATGGATGATACCTTATATAACATTTTTGAAGACAAAACAGAATTTGGAAACAACAACAGTTTTGGTGTAGCAGATGATGATCTTTTTGCCATTTTAGAAAGTCTAGAAGATTTCACTGATTTTCCTCTCATCAAAGAATCTGAAGCTGTTACtccaaaagaaaatgaagacaGTTCGACATCGAGATTAGTGTCTCAAAAATCATCCTCTtcattacaagattctgaaacTGAACTTGAAACAGAACACAAAAGTAAGAGACAGAAGCTTACACCTAGTTTGTTAGAGGAACAGATTAACAATGTTGGACAACAAAGGGTTTCTCATATTACTGTGGAGAGAAACAGAAGAAAGCAAATGAATGAACATTTGTCTGTTTTAAGGTCTCTTATGCCTTGCTTTTATGTCAAAAGGGGAGATCAAGCATCAATAATTGGAGGTGTGGTTGATTACATCAATGAATTGCAACAACTACTTCAAGCTCTTGAAGccaagaaacaaagaaaagtaTATAATGAAGTGCTAAGTCCAAGACCTTCACCACTAAGTCCAAGGTTAGTTTCAAGTCCAAGACCTTCACCATTAAGTCCAAGAAAACCACCTCTAAGTCCTAGACTAAACCTACCAATTAGTCCAAGAACTCCACAACCAAGTAGCCCTTACAAGCCAAGATTACAACAAAGCTACATTGCACTTTCACCTCTTGATCCATCTCCTACTACTTCCTCTGCTTCCTCTGTCAATGATAATATCAATGAGCTTGTTGCAAATTCTAAGTCACCTATTGCTGACGTGGAGGTCAAGTTTTCAGGTCCTCATGTTCTTTTGAAAACTGTTTCTCAAAGAATTCCTGGCCAAGCTTTGAAGATTATATCTGCACTTGAAGATCTTGCACTTGAAATTCTTCATGTTAACATTAATAGTATTTCTGATGATACCATGATGAATTCCTTCACTATCAAGATTGGAATTGAATGCCAACTAAGTGCGGAAGAACTAGCTCAACAAATTCAGCAAACATTCTGCTAA 1029 0.3479 MDDTLYNIFEDKTEFGNNNSFGVADDDLFAILESLEDFTDFPLIKESEAVTPKENEDSSTSRLVSQKSSSSLQDSETELETEHKSKRQKLTPSLLEEQINNVGQQRVSHITVERNRRKQMNEHLSVLRSLMPCFYVKRGDQASIIGGVVDYINELQQLLQALEAKKQRKVYNEVLSPRPSPLSPRLVSSPRPSPLSPRKPPLSPRLNLPISPRTPQPSSPYKPRLQQSYIALSPLDPSPTTSSASSVNDNINELVANSKSPIADVEVKFSGPHVLLKTVSQRIPGQALKIISALEDLALEILHVNINSISDDTMMNSFTIKIGIECQLSAEELAQQIQQTFC 342
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g03020 342 Coils Coil 148 172 - -
Tsu08g03020 342 CDD bHLH_AtFAMA_like 108 180 - -
Tsu08g03020 342 Gene3D - 96 170 IPR036638 GO:0046983
Tsu08g03020 342 PANTHER TRANSCRIPTION FACTOR SPEECHLESS 1 342 - -
Tsu08g03020 342 MobiDBLite consensus disorder prediction 175 223 - -
Tsu08g03020 342 MobiDBLite consensus disorder prediction 49 93 - -
Tsu08g03020 342 MobiDBLite consensus disorder prediction 56 75 - -
Tsu08g03020 342 MobiDBLite consensus disorder prediction 183 219 - -
Tsu08g03020 342 SUPERFAMILY HLH, helix-loop-helix DNA-binding domain 104 171 IPR036638 GO:0046983
Tsu08g03020 342 MobiDBLite consensus disorder prediction 76 91 - -
Tsu08g03020 342 ProSiteProfiles Myc-type, basic helix-loop-helix (bHLH) domain profile. 104 155 IPR011598 GO:0046983
Tsu08g03020 342 SMART finulus 110 161 IPR011598 GO:0046983
Tsu08g03020 342 PANTHER TRANSCRIPTION FACTOR FAMA 1 342 IPR044283 GO:0003700|GO:0010052
Tsu08g03020 342 Pfam Helix-loop-helix DNA-binding domain 105 156 IPR011598 GO:0046983
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu08g03020 Tsu-Chr8 45982941 45985641 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu08g03020 9 322 Basic Helix-Loop-Helix Transcription Factor Gene Family AT5G53210 51.289 6.25e-90 271
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF bHLH Tsu08g03020 HLH 8.6e-11 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu08g03020 K20558 - gmx:100777437 410.609