Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g03009 ATggaaacacaacaacaaaaacagagTATCCTATGCAAATACACAGAACACCACACTGTTACAAAGAAACTCATcacaacaacaaagaaaaacagtaacagcaacaacaacacaacCATAAACCCAAGAGTTGTACGAATATCCGTCACCGACCCAGACGCAACCGACTCATCCGGCGATGAAAGAGAAACACAACCCTTTTTCAGAAACAGAACAAAGCGTTATATAAACCGTATTGAAATCGAAACCACAGTGAAACCAACCGTCAACAGAAAAAGACCTTCCGGAGAATCATCTGTTAAACGGCCGGCGAAGGTTACTGCTGTCAACAACGGTAAAAAGTTCCGCGGTGTACGACAAAGACCGTGGGGAAAATGGGCTGCAGAGATTCGAGATCCTGCTAGAAGGGTTCGTCTTTGGTTAGGTACTTTCGAAACCGCTGAAGAAGCTGCTATGGTTTACGACAATGCTGCGATTAAGCTTCGTGGACCAGACGCTTTAACAAATTTCGGTACACCGCCACAGAAAGAAACTCCGGTTGAACCCACCACCGTGAAACACGAAATGAAGGTAGTTGTGGACCACCCAGAAACTGAAGCTTGTGGTTCTGGTAACTCCGGTTATGATTCCGGTGAAGAACGATGTGTGCCACTTTCATCTCCGACTTCAGTTTTAAATTTCCGGTCTAACTCCGGCGAGTCACAAGAATCGGAGGAAAAAAGTGAAGCGTGTGAAGTTTTTAGAGAGTGTGAAGGTGAAACAAATTTATTCGATGAAACGGCGTCGTTTTTTCAATCTGATTTGCCATGTTTTGATGACGTGTTCCATTTCGAAACTCCAGAGTTTCCTTTGTTATTTGAAGATGAACAGAACAAAATGATGATGTTTGATGATAATACGACGCCGTTTTTGCTTGATGAAGATTTAAGTGACAACATTGTTCTTGCTGACTCACTCATTGATTTTGATAAAGCATGTTTTCCTTCTTCACCTTCTACTTCATCATCTTTGTGCCAAGTGGATGATTTCTTTCAAGATATTTTGTTAGGTTCAGATCCTCTCGTTGTTCTTTGA 1074 0.3976 METQQQKQSILCKYTEHHTVTKKLITTTKKNSNSNNNTTINPRVVRISVTDPDATDSSGDERETQPFFRNRTKRYINRIEIETTVKPTVNRKRPSGESSVKRPAKVTAVNNGKKFRGVRQRPWGKWAAEIRDPARRVRLWLGTFETAEEAAMVYDNAAIKLRGPDALTNFGTPPQKETPVEPTTVKHEMKVVVDHPETEACGSGNSGYDSGEERCVPLSSPTSVLNFRSNSGESQESEEKSEACEVFRECEGETNLFDETASFFQSDLPCFDDVFHFETPEFPLLFEDEQNKMMMFDDNTTPFLLDEDLSDNIVLADSLIDFDKACFPSSPSTSSSLCQVDDFFQDILLGSDPLVVL 357
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g03009 357 PANTHER ETHYLENE-RESPONSIVE TRANSCRIPTION FACTOR CRF1-LIKE 10 348 - -
Tsu08g03009 357 PRINTS Ethylene responsive element binding protein signature 115 126 IPR001471 GO:0003700|GO:0006355
Tsu08g03009 357 PRINTS Ethylene responsive element binding protein signature 137 153 IPR001471 GO:0003700|GO:0006355
Tsu08g03009 357 MobiDBLite consensus disorder prediction 196 215 - -
Tsu08g03009 357 Gene3D AP2/ERF domain 113 172 IPR036955 GO:0003700|GO:0006355
Tsu08g03009 357 SMART rav1_2 114 177 IPR001471 GO:0003700|GO:0006355
Tsu08g03009 357 Pfam AP2 domain 114 163 IPR001471 GO:0003700|GO:0006355
Tsu08g03009 357 ProSiteProfiles AP2/ERF domain profile. 114 171 IPR001471 GO:0003700|GO:0006355
Tsu08g03009 357 SUPERFAMILY DNA-binding domain 114 171 IPR016177 GO:0003677
Tsu08g03009 357 CDD AP2 113 170 IPR001471 GO:0003700|GO:0006355
Tsu08g03009 357 PANTHER SHN SHINE , DNA BINDING / TRANSCRIPTION FACTOR 10 348 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu08g03009 Tsu-Chr8 45768406 45769652 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu08g03009 12 314 AP2-EREBP Transcription Factor Family AT4G27950 40.176 9.40e-61 196
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF AP2/ERF-ERF Tsu08g03009 AP2 3.7e-13 CL0081
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu08g03009 - - gmx:100807598 342.813