Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g03004 ATGAATCTGTGCTGTTCTGACCATGCTGCAAGTGCAAAGGAACCTATTAAGAAATCTAAGAAaaaagaactatctatgaaagTAGAATCTTCTCCCAGTCGTCGAGAcgaaaacaaaattgtattttttgagGATTGTAATCTTGCATTTGATCTAGAGGATCTGTTGACAGCTTCTTGTAAGATTCTTGGAAAGGGTTCTATTGGAACAACATATAAGGCTGCTTTAGAGGATGTAACCACTGTGGTTGTAAAGAGATTGAAAGAGGTTAATGTTGGGAAAAGAGAGTTTGAACAACATATGGAAGTTGTAGGGAAAATTAAGCATGAAAATGTGGATGTATTAAGAGCATACTATTATTCAAAAGATGAGAAATTAGTAGTATATGATTATTATCATCAGGGCAGTGTTTATTCCATCTTACATGGCAAAAGAGGGGAAGGAAGGACTAGTGTAGATTGGTATAGCCGATTAAGGATTGCGATCGGTACTGCAAGAGGCATTGCTCACATCCATACTCAACAAGGAGGGAAACTAGTTCATGGAAACATAAAAGCTTCAAACATCTTCATCAACTCACAAGGATATGGTTGTGTATCTGACATAGGCTTAACGACATTGATGAGTTCAATACCTTCGCCGGGTAATAGAGCAACAGGATATTGTGCGCCAGAAGTAACAGACGGACGTAAAGCAACACATTCGTCTGATGTATACAGTTTTGGTGTCCTATTACTTGAGCTTCTGACTAGAAAACCCCCTATATATTCTTCAGAACGTGATCAAGCTTGTCACTTGGTTAGATGGGTGAAGTCTGTGGTAAGAGAGGAATGGACTTCAGAGGTTTTTGATGTGGAGCTTTTGAGGTATTCAAATATAGAGGAAGAAATGGTGGAGATGCTACAAATAGGGATGGCTTGTGCAGCAAGAAGGCCAGATCAAAGACCAAAAATGGCTGAAGTTGTGAGACTGATAGAAGGGATTCGTCTCGAAAATCGATCGCCGTCTACTGAGTCTAGATCAGAAGTTTCTACTACAACTATTTATtcaacttaa 1056 0.3759 MNLCCSDHAASAKEPIKKSKKKELSMKVESSPSRRDENKIVFFEDCNLAFDLEDLLTASCKILGKGSIGTTYKAALEDVTTVVVKRLKEVNVGKREFEQHMEVVGKIKHENVDVLRAYYYSKDEKLVVYDYYHQGSVYSILHGKRGEGRTSVDWYSRLRIAIGTARGIAHIHTQQGGKLVHGNIKASNIFINSQGYGCVSDIGLTTLMSSIPSPGNRATGYCAPEVTDGRKATHSSDVYSFGVLLLELLTRKPPIYSSERDQACHLVRWVKSVVREEWTSEVFDVELLRYSNIEEEMVEMLQIGMACAARRPDQRPKMAEVVRLIEGIRLENRSPSTESRSEVSTTTIYST 351
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g03004 351 Gene3D Phosphorylase Kinase; domain 1 21 131 - -
Tsu08g03004 351 PANTHER INACTIVE RECEPTOR-LIKE PROTEIN KINASE-RELATED 3 340 - -
Tsu08g03004 351 ProSiteProfiles Protein kinase domain profile. 57 328 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu08g03004 351 SUPERFAMILY Protein kinase-like (PK-like) 60 325 IPR011009 -
Tsu08g03004 351 Pfam Protein kinase domain 61 322 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu08g03004 351 PANTHER OS05G0588300 PROTEIN 3 340 - -
Tsu08g03004 351 Gene3D Transferase(Phosphotransferase) domain 1 133 349 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu08g03004 Tsu-Chr8 45700254 45701644 Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu08g03004 21 343 Receptor kinase-like Gene Family AT4G23740 62.462 7.59e-146 424
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Tsu08g03004 Pkinase 2.1e-31 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu08g03004 - - mtr:MTR_3g090665 545.814