Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g03003 atggacaaGAACCTATTTCTCTTGTTCATGTTTTCAGCAGTGTTGGTTAGTGTTGAAGCTGAACCAGTAGAAGATAAACAAGCTTTACTCGATTTCCTTAACAGAATGAATCATTCTCCACATATCAATTGGGATGAGAATTCTTCTGTATGTCAAACATGGAGAGGAGTTACCTGCAACACTGATCAAACTCGAGTTATAGAGATTCGATTGCCTGGAGCCGGATTAAGCGGCCCAATTCCACCAAACACTCTTAATCGTCTTTCGGCTCTTGAGACAGTGAGTCTTAGATTAAATGGTATTACTGGTTTTTTCCCTGATGATTTCTCTGAGCTGAAAAACTTGACTAGTCTTTATCTTCAATCTAACAAGTTTTCCGGACCATTGCCATTGGATTTTTCTGTTTGGAGTAATCTTTCTGTTCTCAATTTGTCCAACAATTCTTTTAATGGTAGCATCCCTTTTTCAATTGCTAATCTAACTCATCTCAGTTCATTAGTCCTTGCGAATAATTCTCTTTCTGGTGAGATTCCTGATCTTAATATTCATAGCCTTCAATTGCTGAATTTAGCAAACAATAACCTTAGTGGTGTTGTGCCAAAATCACTTCTTAGATTTCCGAGTTCGGCTTTTTCTGGTAACAATCTTACATCAAATACTAGTACACTTCCTCCGGCTTTTCCTATGCATCCACCTTATACTTTTCCACCGAAGAAAACCAAAGGACTAAGTGAAACTGCATTATTGGGAATCATCATCGGTGTTTGCGCACTTGGATTTGCAGTGATTGCAGTTGTCATGATATTGTGCTGCTATGACTTTGCTGCTTCAGGTGTAAAAGAATCCGTAAAAtcgaagaaaaaagaagtaTCTATGAAAGCAGAATCTTCAGCTAGTcgagataaaaacaaaatagtattttttgaGGATTGTAATCTTGCATTTGATTTAGAGGACCTTTTGAGAGCTTCTGCCGAGATTCTTGGAAAGGGTACATTCGGAACAACGTATAAGGCTGCTTTAGAGGATGCAACGACTGTGGCGGTGAAGAGGTTGAAAGAGGTTACTGTCGGGAAAAGGGAGTTTGAACAGCAGATGGAAGTGGTTGGGAAAATTAAGCATGAAAATGTGGATGCATTAAGAGCTTACTATTATTCAAAGGATGAGAAACTAGTAGTATCTGATTATTATCATCAAGGCAGTGTTTCTTCCATCTTACATGGCAAAAGAGGGGAAGGAAGGACTAATCTAGACTGGGATAGCCGTTTAAAAATTGCAATCGGTACAGCAAGAGGCATTGCTCACATCCATACTCAACAAGGAGGGAAACTAGTTCATGGAAACATAAAAGCCTCAAACATCTTCCTAAACTCACAAGGATATGGTTGTGTATCCGACATAGGTTTGGCAACATTGATGATCTCAATACCTTCACCAGGCACAAGAGCAATGGGATACCGTGCTCCAGAAGTAACCGACACACGTAAAGCGATGCATCCGTCTGATGTATACAGTTTCGGTGTCCTATTACTTGAGCTTCTAACCGGGAAATCCCCCATATATTCTTCAGAAGGTGAACAAATTGTTCACTTGGTTAGATGGGTGAATTCTGTTGTCAGAGAGGAATGGACTGCAGAGGTTTTCGATGTGGAGCTTTTACGGTATTCACATATAGAGGAAGAAATGGTGGAGATGCTACAAATAGGGATGGCTTGTGCTGCAAGAATGCCAGAACAGAGACCAAAAATGTCTGAAGTTGTGACAATGATGGAAGCGATTCATCCCGAAAATCGACCATCGTCTACTGAGTCTAGATCAGAAGTTTCTACTCCAACTATTTATGTAACTTAA 1851 0.3895 MDKNLFLLFMFSAVLVSVEAEPVEDKQALLDFLNRMNHSPHINWDENSSVCQTWRGVTCNTDQTRVIEIRLPGAGLSGPIPPNTLNRLSALETVSLRLNGITGFFPDDFSELKNLTSLYLQSNKFSGPLPLDFSVWSNLSVLNLSNNSFNGSIPFSIANLTHLSSLVLANNSLSGEIPDLNIHSLQLLNLANNNLSGVVPKSLLRFPSSAFSGNNLTSNTSTLPPAFPMHPPYTFPPKKTKGLSETALLGIIIGVCALGFAVIAVVMILCCYDFAASGVKESVKSKKKEVSMKAESSASRDKNKIVFFEDCNLAFDLEDLLRASAEILGKGTFGTTYKAALEDATTVAVKRLKEVTVGKREFEQQMEVVGKIKHENVDALRAYYYSKDEKLVVSDYYHQGSVSSILHGKRGEGRTNLDWDSRLKIAIGTARGIAHIHTQQGGKLVHGNIKASNIFLNSQGYGCVSDIGLATLMISIPSPGTRAMGYRAPEVTDTRKAMHPSDVYSFGVLLLELLTGKSPIYSSEGEQIVHLVRWVNSVVREEWTAEVFDVELLRYSHIEEEMVEMLQIGMACAARMPEQRPKMSEVVTMMEAIHPENRPSSTESRSEVSTPTIYVT 616
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g03003 616 MobiDBLite consensus disorder prediction 595 616 - -
Tsu08g03003 616 PANTHER LRR RECEPTOR-LIKE KINASE 7 614 - -
Tsu08g03003 616 MobiDBLite consensus disorder prediction 593 616 - -
Tsu08g03003 616 Gene3D Phosphorylase Kinase; domain 1 286 396 - -
Tsu08g03003 616 Pfam Leucine rich repeat N-terminal domain 24 60 IPR013210 -
Tsu08g03003 616 ProSitePatterns Protein kinases ATP-binding region signature. 328 359 IPR017441 GO:0005524
Tsu08g03003 616 Gene3D Transferase(Phosphotransferase) domain 1 398 612 - -
Tsu08g03003 616 Pfam Protein tyrosine and serine/threonine kinase 326 589 IPR001245 GO:0004672|GO:0006468
Tsu08g03003 616 ProSiteProfiles Protein kinase domain profile. 322 613 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu08g03003 616 Gene3D Ribonuclease Inhibitor 23 231 IPR032675 -
Tsu08g03003 616 ProSiteProfiles Leucine-rich repeat profile. 184 205 IPR001611 GO:0005515
Tsu08g03003 616 PANTHER OS05G0588300 PROTEIN 7 614 - -
Tsu08g03003 616 SUPERFAMILY Protein kinase-like (PK-like) 326 591 IPR011009 -
Tsu08g03003 616 Pfam Leucine rich repeat 80 125 IPR001611 GO:0005515
Tsu08g03003 616 SUPERFAMILY L domain-like 40 208 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu08g03003 Tsu-Chr8 45694676 45698757 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu08g03003 14 612 Receptor kinase-like Gene Family AT4G23740 56.774 0.0 687
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-III Tsu08g03003 PK_Tyr_Ser-Thr 8.8e-34 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu08g03003 - - gmx:100813065 920.613