Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g02996 ATGTCaaacaatgtattaaattttcTTATCTTGTTTCTCACTTTCTCTTTGTTTCCATTAAATTATTCTCTTAACCAAGAAGGTCTCTCTCTACTTTCATGGCTTTCATCTTTCAATTCCTCAAACTCTGtcactactactactattagcTTCTCATCATGGGATCCAAGTCACAAAAATCCTTGCAGATGGGACTATATAAAATGTTCTTCAGAAGAGTTTGTCGAAGAGATCGTGATAACATCGGTTGATCTTCGTAGCCGATTCCCTACACAGTTACTTTCTTTTAACCACCTTACAACTCTTGTAATCTCAAATGGAAATCTTACTGGTGAGATTCCAAGTTCAGTTGGAAACTTATCATCTTTGGTTACTCTTGATCTTAGTTTCAACACTTTAACAGGAAAAATACCAGAAGAAATAGGAAAGTTATCTGAACTGAGATGGTTATCTTTGAATTCGAATTCGTTGCACGGTGGAATTCCAATCACAATTGGTAACTGTTCAAAGCTTCAGCAATTGACACTGTTTGACAACCAGCTTTCCGGTATGATTCCAGGAGAAATAGGACAGTTGAAGGCTCTTGAATCGCTGAGAGCTGGCGGAAATCAAGGTATTTTCGGCGAAATTCCAATGCAGATATCAGATTGTAAGGCtttggtttttcttggacttgCAGTTACTGGAATTTCTGGTGAGATTCCAGCAAGTATAGGAGAACTTCAAAATCTGAAGACACTTTCGGTTTACACAGCACATCTCACAGGTGAAATTCCACCAGAGATTCATAACTGTTcatctttggaagatttgtttcTGTATGAAAATCAACTTTCTGGAAAGATTCCTTATGAATTAGGCTTCATGAAAAGCCTTAAGAGAGTATTGCTATGGCAAAACAATTTAACTGAAACCATTCCAGAAAGTCTTGGAAACTGTACAAATTTGAAGGTTATTGATTTCTCTTTGAATTCTCTGATTGGTCAATTACCTTTGACTCTCAGTAATCTACTCTTATTGGAGGAATTTCTTGTGTctgataataatatttatggAGAAATACCTTCATATATTGGAAATTTTTCCATGTTGAAGCAACTTGAATTAGATAATAACAAATTCACTGGTGAGATTCCATCTGTTATGGGGAACTTGAAGGAACTCACTCTCTTCTTTGCATGGCAGAATCAACTACATGGAAGTATACCAATAGAATTATCTAACTGTGAGAAACTTGAAGCAATTGATCTTTCGCACAATTTCCTCACCGGTCCGATTCCAAATTCTCTCTTTCATCTACAGAATTTAACTCAGTTGTTGCTGTTATCAAACAGATTTTCTGGTCAAATTCCACCGGATATCGGAAGGTGCACCGGCTTGATCAGGTTAAGGCTAGGATCAAACAATTTTACCGGCCATATTCCGCAAGAAATAGGCCTTTTGAAAAGTTTAACCTTTCTAGAATTGTCAGATAATCAACTCGGTGGAGATATTCCTTATGAGATAGGTAACTGTGCTAATTTAGAAATGCTTGACTTACACAAAAATGAGCTTCAAGGAACCATCCCTTCCTCATTAAGATTCTTAGACGGTCTTAATGTCTTGGATCTTTCGGCAAACAGAATCACTGGAAGCATTCCTAGGAGTTTTGGCGAGCTTACATCGTTAAATAAGTTGATTCTGAGTGGAAACCATATCACCGGTTCGATCCCTCAATCACTAGGACTTTGTAAGGATTTGCAGTTGTTGGATTTAAGTAACAATAAGATCATAGGTTCTATTCCCAGTGAGATTGGTTACTTGCAAGGGTTGGATATTCTCTTGAACTTGAGTTGGAATTCTCTTACTGGTCCCGTACCAAACACTTTCTCAAATCTCTCAAAACTTTCAATCTTGGACCTATCTTACAACAACCTCAAAGGTAGTCTCATAGTACTTGGTAATCTTGACAATCTTGTGTCTCTAAATGTTTCTTACAATAGATTTTCCGGTACACTTCCTGACACAAAGTTCTTCCAAGAACTACCTTCTGCTGCATTTGCCGGTAACCCTGATCTTTGCATTAACAAGTGCCATGTAAGTGGAAATCTCCGAGGAAACAAGTCATTAAGAAATATTATTATCTACACTTTCCTTGGTGTTATTTTAACTTCTGCTATTGTTACTTGTGGAGTTATTTTAGCATTAAGGATTCAAGGGGATAGTTTTTATGGGAATAGTTTTGATGAAGTTGAAATGGAATGGTCTTTCACTCCATTCCAAAAGCTTAACTTCAACATCAATGACATTCTCACAAAATTGTCGGATTCAAACATTGTCGGAAAGGGTGGCTCAGGAGTAGTTTATCGTGTAGAGACTCCAACAAGACAGGTTATTGCAGTGAAGAAGTTATGGCCAATAAAGAATGAAGAGACACCAGAGAGAGATCTGTTTACAGCAGAAGTTCAGACACTTGGATCAATAAGGCATAAGAATATAGTGAGACTTTTAGGATGCTGCGACAATGGAAAAACTAAATTGCTCTTGTTTGATTACATAAGTAATGGTAGTTTGTTTGGATTGCTACATGAAAATAGATTGTTCTTGGATTGGGATGCAAGGTATAAGATCATACTTGGAACAGCTCATGGTTTAGAATATCTTCATCATGATTGTATCCCTCCAATTGTCCATCGCGATGTTAAGGCTAACAACATCTTGGTAGGTCCACAGTTTGAAGCTTTTCTTGCAGATTTTGGACTTGCAAAATTGGTCATTTCCTCAGAATGTTCAAGAGCCTCACATGTAGTTGCAGGTTCTTGTGGATACATAGCTCCTGAATATGGATACAGTTTAAGGATCACAGAGAAGAGTGATGTATACAGTTATGGCGTTGTGCTTCTCGAGATGTTAACTGGAATGGAACCAACTGATAACAGGATACCAGAGGGTGCTCACATTGTAACATGGGTTATCAGTGAAATCAGggagaagaaaagagaattTGCATCTATTCTTGATCAGCAATTAGTAGTGCAGTGTGGAACAAGAACACCAGAGATGCTTCAAGTGCTAGGTGTAGCACTTCTCTGTGTGAATCCATCACCAGAAGAAAGACCTACAATGAAAGATGTAACAGCAATGCTGAAGGAGATTAGGCATGGAAATGAAGATTTGGTTGATAAACCAAATATGATCCATAAAGGCAACATGATTACCAATCCAAAAGCAGCAGTTCATTGTTCGAGTTTCTCAAGATCATGTGAACTTTTGATAGagtcatcatcttcttcatag 3276 0.3623 MSNNVLNFLILFLTFSLFPLNYSLNQEGLSLLSWLSSFNSSNSVTTTTISFSSWDPSHKNPCRWDYIKCSSEEFVEEIVITSVDLRSRFPTQLLSFNHLTTLVISNGNLTGEIPSSVGNLSSLVTLDLSFNTLTGKIPEEIGKLSELRWLSLNSNSLHGGIPITIGNCSKLQQLTLFDNQLSGMIPGEIGQLKALESLRAGGNQGIFGEIPMQISDCKALVFLGLAVTGISGEIPASIGELQNLKTLSVYTAHLTGEIPPEIHNCSSLEDLFLYENQLSGKIPYELGFMKSLKRVLLWQNNLTETIPESLGNCTNLKVIDFSLNSLIGQLPLTLSNLLLLEEFLVSDNNIYGEIPSYIGNFSMLKQLELDNNKFTGEIPSVMGNLKELTLFFAWQNQLHGSIPIELSNCEKLEAIDLSHNFLTGPIPNSLFHLQNLTQLLLLSNRFSGQIPPDIGRCTGLIRLRLGSNNFTGHIPQEIGLLKSLTFLELSDNQLGGDIPYEIGNCANLEMLDLHKNELQGTIPSSLRFLDGLNVLDLSANRITGSIPRSFGELTSLNKLILSGNHITGSIPQSLGLCKDLQLLDLSNNKIIGSIPSEIGYLQGLDILLNLSWNSLTGPVPNTFSNLSKLSILDLSYNNLKGSLIVLGNLDNLVSLNVSYNRFSGTLPDTKFFQELPSAAFAGNPDLCINKCHVSGNLRGNKSLRNIIIYTFLGVILTSAIVTCGVILALRIQGDSFYGNSFDEVEMEWSFTPFQKLNFNINDILTKLSDSNIVGKGGSGVVYRVETPTRQVIAVKKLWPIKNEETPERDLFTAEVQTLGSIRHKNIVRLLGCCDNGKTKLLLFDYISNGSLFGLLHENRLFLDWDARYKIILGTAHGLEYLHHDCIPPIVHRDVKANNILVGPQFEAFLADFGLAKLVISSECSRASHVVAGSCGYIAPEYGYSLRITEKSDVYSYGVVLLEMLTGMEPTDNRIPEGAHIVTWVISEIREKKREFASILDQQLVVQCGTRTPEMLQVLGVALLCVNPSPEERPTMKDVTAMLKEIRHGNEDLVDKPNMIHKGNMITNPKAAVHCSSFSRSCELLIESSSSS 1091
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g02996 1091 PANTHER LEUCINE-RICH REPEAT RECEPTOR-LIKE PROTEIN KINASE FAMILY PROTEIN-RELATED 3 1063 - -
Tsu08g02996 1091 Pfam Leucine rich repeat 98 157 IPR001611 GO:0005515
Tsu08g02996 1091 Pfam Leucine rich repeat 507 566 IPR001611 GO:0005515
Tsu08g02996 1091 SUPERFAMILY L domain-like 43 389 - -
Tsu08g02996 1091 Gene3D Phosphorylase Kinase; domain 1 740 845 - -
Tsu08g02996 1091 ProSiteProfiles Protein kinase domain profile. 767 1045 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu08g02996 1091 Pfam Leucine rich repeat N-terminal domain 25 70 IPR013210 -
Tsu08g02996 1091 PRINTS Leucine-rich repeat signature 532 545 - -
Tsu08g02996 1091 PRINTS Leucine-rich repeat signature 626 639 - -
Tsu08g02996 1091 SMART LRR_typ_2 649 682 IPR003591 -
Tsu08g02996 1091 SMART LRR_typ_2 289 313 IPR003591 -
Tsu08g02996 1091 SMART LRR_typ_2 481 505 IPR003591 -
Tsu08g02996 1091 SMART LRR_typ_2 120 144 IPR003591 -
Tsu08g02996 1091 SMART LRR_typ_2 553 577 IPR003591 -
Tsu08g02996 1091 SMART LRR_typ_2 433 457 IPR003591 -
Tsu08g02996 1091 SMART LRR_typ_2 626 648 IPR003591 -
Tsu08g02996 1091 SMART LRR_typ_2 529 552 IPR003591 -
Tsu08g02996 1091 SMART LRR_typ_2 601 625 IPR003591 -
Tsu08g02996 1091 Gene3D Ribonuclease Inhibitor 189 393 IPR032675 -
Tsu08g02996 1091 ProSitePatterns Serine/Threonine protein kinases active-site signature. 889 901 IPR008271 GO:0004672|GO:0006468
Tsu08g02996 1091 Pfam Leucine Rich Repeat 411 433 IPR001611 GO:0005515
Tsu08g02996 1091 Pfam Leucine Rich Repeat 608 626 IPR001611 GO:0005515
Tsu08g02996 1091 Gene3D Ribonuclease Inhibitor 395 694 IPR032675 -
Tsu08g02996 1091 PANTHER LRR RECEPTOR-LIKE KINASE 3 1063 - -
Tsu08g02996 1091 Gene3D Transferase(Phosphotransferase) domain 1 846 1063 - -
Tsu08g02996 1091 Gene3D Ribonuclease Inhibitor 24 188 IPR032675 -
Tsu08g02996 1091 ProSiteProfiles Leucine-rich repeat profile. 555 577 IPR001611 GO:0005515
Tsu08g02996 1091 SUPERFAMILY RNI-like 330 667 - -
Tsu08g02996 1091 SMART serkin_6 767 1042 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu08g02996 1091 ProSiteProfiles Leucine-rich repeat profile. 579 601 IPR001611 GO:0005515
Tsu08g02996 1091 Pfam Protein kinase domain 770 1039 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu08g02996 1091 ProSitePatterns Protein kinases ATP-binding region signature. 773 801 IPR017441 GO:0005524
Tsu08g02996 1091 SUPERFAMILY Protein kinase-like (PK-like) 763 1062 IPR011009 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu08g02996 Tsu-Chr8 45606116 45610129 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu08g02996 22 1082 Receptor kinase-like Gene Family AT5G56040 46.642 0.0 910
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_LRR-XI-1 Tsu08g02996 Pkinase 1.4e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu08g02996 - - gmx:100807225 1681