Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g02959 ATGACTTTTGGTTTGGTTTACACGGTTTATGCTACTGCAGTACACCCAAAAAATGGTAGCCTAGGAACAATTGCTCCAATTGCTATTGGTTTCATTGTAGGAGCCAACATCTTGGCAGATGGGGCCTTTGATGGTGCTTCCATGAACCAGCAGTGTCTTTTGGGCCTGCTGTCGTTAGCTGGACATGGACCAATCACTGGGTCTATTGGGTTGAACCGTTGA 222 0.464 MTFGLVYTVYATAVHPKNGSLGTIAPIAIGFIVGANILADGAFDGASMNQQCLLGLLSLAGHGPITGSIGLNR 73
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g02959 73 Gene3D Glycerol uptake facilitator protein. 1 69 IPR023271 -
Tsu08g02959 73 Pfam Major intrinsic protein 1 50 IPR000425 GO:0015267|GO:0016020|GO:0055085
Tsu08g02959 73 SUPERFAMILY Aquaporin-like 1 57 IPR023271 -
Tsu08g02959 73 PANTHER AQUAPORIN TIP1-1 1 52 - -
Tsu08g02959 73 PANTHER AQUAPORIN-8 1 52 IPR034294 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu08g02959 Tsu-Chr8 45105499 45105720 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu08g02959 1 55 Major Intrinsic Protein MIP AT3G26520 85.455 1.63e-24 90.1
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu08g02959 K09873 - ath:AT3G26520 92.8189