Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g02941 atggaggattcttcttcagcaCCTGAAGATACCAAGAGTTGTCCCCGTGGTCACTGGCGACCTGCAGAAGACGAAAAGCTTCGACAACTTGTTGAACAATATGGTGCTCAAAATTGGAATTCAATTGCTGAAAAACTCCAAGGAAGATCAGGGAAAAGTTGTAGGTTGAGATGGTTCAATCAGTTAGACCCAAGAATTAATAGAAGACCTTTCacagaagaggaagaagagagacTACTCGCGGCTCATCGTATTCATGGAAACAAATGGGCACTAATCGCACGACTTTTCCCCGGTAGAACTGATAATGCTGTGAAGAATCATTGGCATGTTGTTATGGCTAGAAAACAAAGAGAACAATCTAAGTTATGTGGTAAAAGAAGTTTTCAAGATCTTTATAACAACACTTCTTCTTCCAGCATACTTAATTTTCCTTACATGGCGCGAATCggatatgaaaatgaaaaattctaTCAATTTCAGAACAATCTTGATACTTCTTCTAGTTCTATTGCTTCTTGGAATTTTGCTTCAGTTCTAAAAACAAATACTACTACTACTGCTGCTACTACTACTACGACTCTTTTTCCGGATAATTCTCTCACGGAAAAAGTATCCAATTGTTCTAAAGGTTCAGATGGATCATATCTCtacaaaatttgtcaaaatccAACATTCTCATCATCACTTCCAAATTACAAGAGGGTTGTTCCAAATGCTTTTGGTTTTTTTAGTTCTTCTAATGATGGAAGGATAAGAAAGGATATGATGAGTAGTTTACGCGATAATTCATCGACATTAATCGCAAACTTAAAAGCTTCCAAGGAGAAAGAGCAAGATCATGATCCAGTCGAAATCGAGCAGCACAAAGAAGTTCCTTTCATTGATTTTCTAGGTGTAGGTGTCTCTTCatcataa 918 0.341 MEDSSSAPEDTKSCPRGHWRPAEDEKLRQLVEQYGAQNWNSIAEKLQGRSGKSCRLRWFNQLDPRINRRPFTEEEEERLLAAHRIHGNKWALIARLFPGRTDNAVKNHWHVVMARKQREQSKLCGKRSFQDLYNNTSSSSILNFPYMARIGYENEKFYQFQNNLDTSSSSIASWNFASVLKTNTTTTAATTTTTLFPDNSLTEKVSNCSKGSDGSYLYKICQNPTFSSSLPNYKRVVPNAFGFFSSSNDGRIRKDMMSSLRDNSSTLIANLKASKEKEQDHDPVEIEQHKEVPFIDFLGVGVSSS 305
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g02941 305 SUPERFAMILY Homeodomain-like 14 109 IPR009057 -
Tsu08g02941 305 Gene3D - 70 130 - -
Tsu08g02941 305 PANTHER TRANSCRIPTION FACTOR MYB56 7 303 - -
Tsu08g02941 305 Gene3D - 16 67 - -
Tsu08g02941 305 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 11 62 IPR017930 -
Tsu08g02941 305 Pfam Myb-like DNA-binding domain 19 79 - -
Tsu08g02941 305 PANTHER MYB PROTEIN-RELATED 7 303 - -
Tsu08g02941 305 CDD SANT 19 60 IPR001005 -
Tsu08g02941 305 ProSiteProfiles Myb-like domain profile. 63 113 IPR001005 -
Tsu08g02941 305 SMART sant 67 115 IPR001005 -
Tsu08g02941 305 SMART sant 15 64 IPR001005 -
Tsu08g02941 305 ProSiteProfiles Myb-like domain profile. 16 62 IPR001005 -
Tsu08g02941 305 MobiDBLite consensus disorder prediction 1 22 - -
Tsu08g02941 305 CDD SANT 70 113 IPR001005 -
Tsu08g02941 305 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 63 117 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu08g02941 Tsu-Chr8 44932963 44934196 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu08g02941 14 179 MYB Transcription Factor Family AT1G17950 53.299 4.41e-69 213
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Tsu08g02941 Myb_DNA-bind_6 2e-17 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu08g02941 K09422 - gmx:100802283 356.681