Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g02938 ATGTATATGACAGATACTTACTCCGGACAGAGTTACGAGAAGTATTTCCACGACTCACAAACCGAAGAACTGATAGAACCGTCTAGTTCCGACATCTCTATAAGTTCAATTCATCCAGATAGTGCTTCTTCTTACCAGCTAATAGGTGGTTCAGGAACTTCATTGGTTGCTAATAAACAATTTGATACTTATTTTGGATCGGATTTGATTATGGAAAAGCAAAGCGTGGATTCAATTGAAGTTGATGGTGTAATGAGATCGAAGCTAGAAGCATTGGAGAGGGCATTGCTTGATGATAGTGACATTGAGGTGGAAGAGGAATATGTGAATTCTCAAAACATGGAAATTGATCCTAACATTATCGATTGGGCTGATCCTGATCCAATTCAGAATATGCTTCTCCATGACTCACCAAAGGAGTATTCGTCGTCAGATTCGAATATTAGCAGCATCAGCAGAGAAATACCAAAAATTTCTAGGACTCCAAAGCAATTGCTATATGAATGTGCTACTGCAATTTCGGAAGGAAATGAAGAGGGAGCATCGTTGATGATAAACGTTCTCCGGCAGATGGTCTCAATTCAAGGAGAGCCTTCTCAAAGAATTGCAGCCTATATGGTGGAGGGACTTGCCGCTCGCCTCGCTGAATCCGGAAAAAGTATTTATAGAGCTCTAAAATGTAAGGAACCTCCTTCTTTGGACCGTTTAGCAGCGATGCAGATACTTTTTGAGGTCTGTCCGTGTTTTAAATTCGGGTTTATTGCTGCTAATAATGCAATTTCTGAAGCAGTTAAAGATGAAATGAAGATTCATATAATAGATTTTGACATCAATCAAGGAAGTCAGTATATTAATCTTATTCAAACACTTGCTTCGAGGTCTATTAAGCCATCCCATGTTAGATTGACCGGCATTGATGATCCTGAGTCCGTGCAGCGATCCCTTGGAGGACTAAAGATCATAGGACAAAGACTTGAACAACTAGCAGAAACACTTGGTTTGTCATTTGAATTTCGAGCAGTCGCATCAAGGACTTCAATTGCGACCTCATCGATGCTTAATTGTCGTCGTGGAGAAGctcttgtggttaattttgCATTCCAGCTGCATCATATGCCTGATGAGAGTGTTTCAACAGTAAACGAGCGAGACCAACTTCTTCGTTTAGTAAAGGGTTTGAATCCGAAGCTTGTAACGGTCGTGGAGCAAGATGTAAACACCAATACTACCcctttcttgcaaagatttgcTGAAGCTTACAATTACTATTCGGCTGTGTTTGAGTCGCTTGATGTTACTCTTCCTAGAGAGAGTCAGGATAGGATGAATGTCGAGAGACAATGCTTAGCAAGGGACATTGTTAATACAGTTGCGTGTGAAGGCGAGGATCGGATAGAACGGTATGAAGTCGCAGGAAAATGGAGAGCTAGGATGACAATGGCTGGCTTCATTTCATCTCCAATGAGCACTAACGTGAGCGATGAAATACGAAAACTCATTAAGGTGTATTGTGATAGGTACAAGATAAAGGAGGAAAAGGGTGCACTTCATTTTGGTTGGGAAGACAAAAACTTGATTGTTGCTTCAGCATGGAGGTGA 1599 0.4015 MYMTDTYSGQSYEKYFHDSQTEELIEPSSSDISISSIHPDSASSYQLIGGSGTSLVANKQFDTYFGSDLIMEKQSVDSIEVDGVMRSKLEALERALLDDSDIEVEEEYVNSQNMEIDPNIIDWADPDPIQNMLLHDSPKEYSSSDSNISSISREIPKISRTPKQLLYECATAISEGNEEGASLMINVLRQMVSIQGEPSQRIAAYMVEGLAARLAESGKSIYRALKCKEPPSLDRLAAMQILFEVCPCFKFGFIAANNAISEAVKDEMKIHIIDFDINQGSQYINLIQTLASRSIKPSHVRLTGIDDPESVQRSLGGLKIIGQRLEQLAETLGLSFEFRAVASRTSIATSSMLNCRRGEALVVNFAFQLHHMPDESVSTVNERDQLLRLVKGLNPKLVTVVEQDVNTNTTPFLQRFAEAYNYYSAVFESLDVTLPRESQDRMNVERQCLARDIVNTVACEGEDRIERYEVAGKWRARMTMAGFISSPMSTNVSDEIRKLIKVYCDRYKIKEEKGALHFGWEDKNLIVASAWR 532
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g02938 532 PANTHER OSJNBA0084A10.13 PROTEIN-RELATED 1 531 IPR005202 -
Tsu08g02938 532 Pfam GRAS domain family 163 532 IPR005202 -
Tsu08g02938 532 ProSiteProfiles GRAS family profile. 153 532 IPR005202 -
Tsu08g02938 532 PANTHER GRAS FAMILY TRANSCRIPTION FACTOR 1 531 IPR030011 GO:0003700|GO:0005634
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu08g02938 Tsu-Chr8 44891195 44892793 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu08g02938 5 532 GRAS Transcription Factor Family AT1G21450 61.993 0.0 634
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF GRAS Tsu08g02938 GRAS 9e-133 CL0063
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu08g02938 - - cam:101513397 818.92