LGRPv2

Gene search

Sequence information

Select	Gene	Cds	Cds_length	GC_content	Pep	Pep_length
	Tsu08g02929	ATGGATTTAACGTCCACTTCATCTCGAATTGGTGATATTTATTCGACTGAAGCATCTGGAAGTGAACAATTGACTTCATCTGATAGCTCTCAATGTTGCCACCCTGACATTAAGAAATCATGGGACACTTTGGTATTTCATTCTATTAAAGAGGTTGAAGATTTCTATGGTCAGTATGCATATAAAACTGGATTTTCAATCAGGAGTATGTTGAAGTCGAAGAATAACTCAAAGAATAAGAAGTCGGATAAGATACATTATCTACGTTATACTTGTAACAAAGAAGGTTTTAAGAAAGGAAGTTTGCTTGATCCGAAAAACAAGCCAAGATCAGACAGTCCGGTtgttattgaatttgaaaaagtgaaAGAGAGACCGGAGGAAAGGATTGGTTGTAAAGCTGGAATATCTCTAAAAATGGCAGGACGTAATGATCTAGCGCTCGCGAACGCATTGACCCTCATAGCTCAGACCCTTCAGCAAAATCAGCAGGGAGGTACTGATGGGCACGTACTAGATCGGTTCATGAGGCAAGAGCCTCCCAAATTTGACGGAGGGCACAATCCTGATGTTGCCTACAAGTGGTTGCAAGAGACTGAAAGGATCTTCCAAGTTGTGGAGGCGACTGAGGCACATAAAGTGATGCTGGCCACCCATCGATTGATTTATGACGCTGACTTTTGGTGGGGCAATACACGTCAGAGGATGATAGCTGCTGGTACACTCATGACTTGGAACAACTTTAAAAATGAATTCCTTGCAAAGTATTTTCCAGCGGACGTAAAGACAAAGAAGGAGATCGAGTTTCTGAAGCTTGAGCAGGGCAGTATGACTGTTGCTGAGTATGCAAAGAAGTTTGATGAGTTATCCAGATTCTGTCCTCACATTAATGCAGCAGAAGCAGAAGCTTCCAAGTGTGTCAAGTTTGAGGGCGGTCTACGCCCAGATATCAAGAAGGCTGTTGGTTATCAGGAGATTCGTAATTTCGCTTCGCTAGTCAACAAAAGCAGAATCTATGAGGAAGACTCGAAGGCTAGTTCAAGTTACAACAAGGCTCGTGGGGAAAAAGAAATGATGGACAGAACCGTAGTAAGCCTTATGAGGGGTAAATTTGGGCGTTATAATCACCGTTACCTCAGATCATTCCGAGAAGTAAATGAAGTTCAAGGACAGCTTGCTGTAATTAATTCTAAAGCTGGAATGTCGACGAGGACGTCTTATGAAGTCATGGGTCAAGGAGTTGGAGGCACAAAGAATCTCCCATTTCGGTTTTCGGACCTAAAGAATTATTTGATGACAATTCGTTCAAAGGAGATGAAGAGGAGTGAAGCAACTGTAATTCAAGAGTTTTTTAGGAATGAAGCTTTGTCGAAACCATCTTTTTACTATGATATGCAAGTTGATGCTGCAGAAGACATAGCTAGAATTTTTTGGGCAGATGGAATTATGCAACTGGATTATTCTTTATTTGGCGATGTTATCAGTTTCGATACGACGTACCGAACAAACAATCAATATCGTCCATTAGGTTAG	1533	0.409	MDLTSTSSRIGDIYSTEASGSEQLTSSDSSQCCHPDIKKSWDTLVFHSIKEVEDFYGQYAYKTGFSIRSMLKSKNNSKNKKSDKIHYLRYTCNKEGFKKGSLLDPKNKPRSDSPVVIEFEKVKERPEERIGCKAGISLKMAGRNDLALANALTLIAQTLQQNQQGGTDGHVLDRFMRQEPPKFDGGHNPDVAYKWLQETERIFQVVEATEAHKVMLATHRLIYDADFWWGNTRQRMIAAGTLMTWNNFKNEFLAKYFPADVKTKKEIEFLKLEQGSMTVAEYAKKFDELSRFCPHINAAEAEASKCVKFEGGLRPDIKKAVGYQEIRNFASLVNKSRIYEEDSKASSSYNKARGEKEMMDRTVVSLMRGKFGRYNHRYLRSFREVNEVQGQLAVINSKAGMSTRTSYEVMGQGVGGTKNLPFRFSDLKNYLMTIRSKEMKRSEATVIQEFFRNEALSKPSFYYDMQVDAAEDIARIFWADGIMQLDYSLFGDVISFDTTYRTNNQYRPLG	510

Annotation information

Select	Seq ID	Length	Analysis	Description	Start	End	IPR	GO
	Tsu08g02929	510	Pfam	Retrotransposon gag protein	216	315	IPR005162	-
	Tsu08g02929	510	PANTHER	PROTEIN FAR1-RELATED SEQUENCE 10-RELATED	45	509	IPR031052	GO:0006355
	Tsu08g02929	510	Pfam	FAR1 DNA-binding domain	54	144	IPR004330	-
	Tsu08g02929	510	PANTHER	OS01G0607050 PROTEIN	45	509	-	-

Duplication type information

Select	Gene	Chromosome	Start	End	Duplicated_type
	Tsu08g02929	Tsu-Chr8	44753145	44763319	Dispersed/Wgd

Transcription factors information

Select	Regulatory Factors	Family	Gene	Hmm_acc	Hmm_name	E_value	Clan
	TF	FAR1	Tsu08g02929		Retrotrans_gag	1.3e-17	CL0523

Pathway information

Select	Query	KO	Definition	Second KO	KEGG Genes ID	GHOSTX Score
	Tsu08g02929	-		-	mtr:MTR_0558s0020	243.817