Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g02925 atggaggattcttcttcagcaCCTGAAGATACCAAAAGTTGTCCCCGTGGTCACTCGCGACCCGCTGAAGACGAAAAGCTTCGACAACTTGTTGAACAGGTTGATCAAAATTGGAATTCAATTAATGAAAATCTTCAAGGAAGATCAGGGAAAAGTTGTAGGTTGAGATGGTTCAATCAGTTAGACCCAAGAATTAATAGAAGACCTTTCATAgaagagaaggaagagagaCTACTCGCGGCTAATCGTATTCATGGAAACAAATGGGCACTAATCGCGCGACTTTTCCCCAGTAGAACTGCTAATGCTGTGAAGAATCATTGGCATGTTGTTATGGCTAGAAACCAAAGGGAACAATCTAAGTTATGTGGTAAAAGAAGTTTTCAAGATCTTTATAacaacattttttcttctagCATACTTAATTTCCCTTACATGTTGTGA 444 0.3423 MEDSSSAPEDTKSCPRGHSRPAEDEKLRQLVEQVDQNWNSINENLQGRSGKSCRLRWFNQLDPRINRRPFIEEKEERLLAANRIHGNKWALIARLFPSRTANAVKNHWHVVMARNQREQSKLCGKRSFQDLYNNIFSSSILNFPYML 147
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g02925 147 SMART sant 66 114 IPR001005 -
Tsu08g02925 147 SMART sant 15 63 IPR001005 -
Tsu08g02925 147 PANTHER MYB PROTEIN-RELATED 7 129 - -
Tsu08g02925 147 CDD SANT 72 112 IPR001005 -
Tsu08g02925 147 ProSiteProfiles Myb-like domain profile. 62 112 IPR001005 -
Tsu08g02925 147 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 62 116 IPR017930 -
Tsu08g02925 147 SUPERFAMILY Homeodomain-like 21 112 IPR009057 -
Tsu08g02925 147 MobiDBLite consensus disorder prediction 1 24 - -
Tsu08g02925 147 PANTHER OS08G0435700 PROTEIN 7 129 - -
Tsu08g02925 147 Pfam Myb-like DNA-binding domain 21 78 - -
Tsu08g02925 147 CDD SANT 21 59 IPR001005 -
Tsu08g02925 147 ProSiteProfiles Myb-like domain profile. 23 61 IPR001005 -
Tsu08g02925 147 Gene3D - 16 66 - -
Tsu08g02925 147 Gene3D - 69 129 - -
Tsu08g02925 147 ProSiteProfiles Myb-type HTH DNA-binding domain profile. 21 61 IPR017930 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu08g02925 Tsu-Chr8 44714718 44715444 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu08g02925 14 147 MYB Transcription Factor Family AT1G17950 58.940 1.98e-57 177
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF MYB Tsu08g02925 Myb_DNA-bind_6 5.7e-13 CL0123
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu08g02925 K09422 - gmx:100802283 238.424