Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g02922 ATGAAAATTGAAACTGAAATGGGGAAAGTTTGTAAGAAGTTTGATGATGTTGCTGATATCTTACCTAATAAGGAGGCTATTCGTATCATGGTTCGTGTGCCTCGTCTGTGGAAGGTTCCCTCTTTCTTTAATACCTTTGATACCAATTCCATTGAAATGGTTTTAGTTGATGAAAAGgGTTCGAAAATCCATGCTTCTTTTAGGAAGCAGTTGTTATATATGTTTGAATCCAATGTTCAAGAGGTAGAGATGTATCAGAACTCTTATTTAACTGTTATCCCATGTAGTGGTTACTACCGCACAACTCTCCATCCATATAAACTTATCTTCCAACTTAAGACTAAAATACAACTTGTCCTTAATTCTGCCATCTCTAATTATGGACTGAGTTTGACAAATTTGGCTGAAGTGTGTGCACATCAACATGATTACGAATACTTAGTTGATGTTGTTGGTCTGCTCAATGGAATATCTGTGGAAAGGGAATATATTAGGGAAGACAAGGTAACCAAAATGATAATCATTGATTTGACTGATGCTAGTGGAAAGTGTGCATTGTTTGGTGACTATGTTGATGagctaaataataaaatgagtaAAGAAAAGGAAGGTCTTCCTGATGTTGTAATTCAATTTGCCAAAGTTAAGATTTTCAGAGACAAGACATCAATTCAGAATGTTATCAACACAACTAGGATTTTTGTTAATCCAGATATCCCTGAGGCTGAGGCACTTAAAAAGGGaATCGATATCCATGGCATTGATGTCGATAATGTTGTACCTGTTATCGGAGGGCATGCTAAACCTTCCCTTGAGGAAGAGTTTTTGCGTATGcacccaaaaaagaaaattgcagATCTTTATGAACTTGAAGAAGATGGTGTTTTTGCTGTTTTTGGAATAGTGTATGGGATTGTTAAGGGTCAGGAATGGTGGTACCCTGCGTGTAAATGTCACGGATCTGTTGTTGCTGATTCTGGTGCCTACTATTGCAATGGATGTTCTAAGCATGTGTTTCAAATTCTGCCAAGGTTTAAAGTTAAGATAGAGGTATCTCACGGGGATGCTACCTGCGTGTTTGTTCTATTTGATTCAGAAATGAGTTATATCATGGAGAAATCATGTGCTCAGTTTGTTGCACAAGCCAAGGTTTCCAATGATGGATCCTATCCTGCTGAGTTTGAGTCATTGGTTGGGAAAACTATGTTGGTTACAATTGAAAAGGGTATTAAACAAACCACTTCATCCGATGGAACATTTAGGGTGAAGCGAACATGCAGTGATCCCACTATTATTGAAAAATTCTCTGCTGAAGGTCCTTATTTCACCCCAGTTAAGCCTATGGCCCAAGCAATTGATGTTGACTCTTATTCTTCCTTGgatgatgttgatgttgttgaagaTTCCCAGCCACTATATTTTATGAAGCACATATTTGTATCCCCACCTAGCCCTGTTGTTAAAATAATTGATAACCAAGATGTCGTCGACAGTGTCAAGAGAAACTTATCTGAAGTTTTCGATGGCGTTAGGGAACTACGCGGCAGGAATTTGTCAAAGAGAGACGAGATGCCCCTGAATAGCATGCTCGAAGTGGAGCCATTTGATTGTTGGGGAATTGACTTCATGGGACCGTTCCCGTCCTCAAAGTTAAATCTCCACATTCTAGTATGTGTTGACTATGTGACAAAGTGGGTTGAAGCCATCGCTTGTCAGGCTAATGATGCCCACACAGTGGTAAAATTTTTAAAGAATAACATCTTCACTCGGTTTGGGGTGCCAAGAGTCCTCATCAGTGATGGAGGGAAGCACTTTTgcaacaaatatttaaaaaatttgttggtGAAGTACAATGTGAAACACAAGGTTGCCACCCCTTACCATCCACAAACAAGCGGACAAGTCGAAGTGTCTAACCGGCAATTAAAGCAAATTCTTGAGAAGACAGTTTGGACTTCGAGGAAAGACTAG 1971 0.3775 MKIETEMGKVCKKFDDVADILPNKEAIRIMVRVPRLWKVPSFFNTFDTNSIEMVLVDEKGSKIHASFRKQLLYMFESNVQEVEMYQNSYLTVIPCSGYYRTTLHPYKLIFQLKTKIQLVLNSAISNYGLSLTNLAEVCAHQHDYEYLVDVVGLLNGISVEREYIREDKVTKMIIIDLTDASGKCALFGDYVDELNNKMSKEKEGLPDVVIQFAKVKIFRDKTSIQNVINTTRIFVNPDIPEAEALKKGIDIHGIDVDNVVPVIGGHAKPSLEEEFLRMHPKKKIADLYELEEDGVFAVFGIVYGIVKGQEWWYPACKCHGSVVADSGAYYCNGCSKHVFQILPRFKVKIEVSHGDATCVFVLFDSEMSYIMEKSCAQFVAQAKVSNDGSYPAEFESLVGKTMLVTIEKGIKQTTSSDGTFRVKRTCSDPTIIEKFSAEGPYFTPVKPMAQAIDVDSYSSLDDVDVVEDSQPLYFMKHIFVSPPSPVVKIIDNQDVVDSVKRNLSEVFDGVRELRGRNLSKRDEMPLNSMLEVEPFDCWGIDFMGPFPSSKLNLHILVCVDYVTKWVEAIACQANDAHTVVKFLKNNIFTRFGVPRVLISDGGKHFCNKYLKNLLVKYNVKHKVATPYHPQTSGQVEVSNRQLKQILEKTVWTSRKD 656
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g02922 656 CDD RPA1_DBD_C 286 401 IPR013955 -
Tsu08g02922 656 Gene3D - 268 434 IPR012340 -
Tsu08g02922 656 PANTHER - 520 649 - -
Tsu08g02922 656 Gene3D - 123 254 IPR012340 -
Tsu08g02922 656 PANTHER PROTEIN NYNRIN-LIKE 520 649 - -
Tsu08g02922 656 ProSiteProfiles Integrase catalytic domain profile. 530 656 IPR001584 GO:0015074
Tsu08g02922 656 Gene3D - 530 656 IPR036397 GO:0003676
Tsu08g02922 656 CDD RPA1_DBD_A_like 28 116 - -
Tsu08g02922 656 Pfam Replication factor-A C terminal domain 305 425 IPR013955 -
Tsu08g02922 656 Gene3D - 12 118 IPR012340 -
Tsu08g02922 656 SUPERFAMILY Nucleic acid-binding proteins 14 120 IPR012340 -
Tsu08g02922 656 Pfam Domain of unknown function DUF223 52 117 IPR003871 -
Tsu08g02922 656 SUPERFAMILY Nucleic acid-binding proteins 282 407 IPR012340 -
Tsu08g02922 656 SUPERFAMILY Ribonuclease H-like 533 654 IPR012337 -
Tsu08g02922 656 SUPERFAMILY Nucleic acid-binding proteins 130 257 IPR012340 -
Tsu08g02922 656 Pfam Integrase core domain 533 629 IPR001584 GO:0015074
Tsu08g02922 656 CDD RPA1_DBD_B_like 149 247 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu08g02922 Tsu-Chr8 44648454 44652098 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu08g02922 55 371 Core DNA Replication Machinery Family AT5G08020 22.024 9.77e-10 59.7
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu08g02922 - - mtr:MTR_8g062030 461.84