Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g02909 ATGCAGACCGATTTGGTTCTCGGTGTGGTTGTCACGTTCTTGCGCACCGTGGCTGATCTCTTCTTCTTGTTTCATGTTGTTCTTAAGTTTCGAACTGCGTTCAATTCTCCTACCTCTCATGTTTATGGTCGGAAAGAACTTATTAGTGATCCGACTGAGATTGCTCGTAGATATCTCAAGCATGATTTTATCATTGATCTTCTCGCCACCCTTCCTTTACCTCAGATCGTTATTTGGTTTATAGTTCCGGCAACAAAAAATTCAACGGCAGCTCATGTAAACCACACGCTGTCCTTAATCGTTCTCATTCAGTACATTCCTAGATTGTTTCAGATTTTTCCATTACAAAAACGAATCTTGAAGACTAGCGGGCTTATAGCGAAAACTGCTTTAGCAGGAGCATTATACAATCTCGGCTTCTACATGCTCGCCAGCCATGTTTTAGGAGCAACATGGTATGTGTCTTCTATTCAGAGACAATATGAATGTTGGAGAATAATGTGCAAGAAGGAAATGAATAGAACACATTCTCCTTCTTGTAATCCTTCTTTTCTTGATTGTACTTCTCTTTCTAACCGCGAAAGACAAGTTTGGTTTCGACGCACGAGAGTCCTAACTAATTGTGATGCACTCAATGATAAAAACCACTTTCAGTTTGGAATGTTTGCTGATGCTTTTACTGATCAtgtttcttcctcaaaattcatacaaaaatatttttattgccTTTGGTGGGGTTTGAAAAATCTAAGTTCCTATGGACAAAATATACAAACTAGCACTTACAGCGGCGAAACATTATTTTGTAGTTTCATATGCATAGCAGGACTTATTCTGTTTGCACATCTCATTGGTAACATGCAGAATTATCTGCAATCTTCGACCGCAAGACTTGAAGAGTGGAGACTTAGACAAAAAGATACAGAAGAATGGATGAATCATCGTCAACTTCCACCAGAACTACAAGAGCGTGTTCGTCGCTTTGTTCAGTACAAATGGCTTGCGACTAGAGGTGTTGACGAAGAAGCCATATTGAAATCCTTGCCTGTTGATCTTCGCCGCCAGATTCAAAGGCATCTCTGTCTTGATATTGTTCGCCGGGTACCTTTTTTTGGGCAAATGGATGATCAACTTCTAGACGCTATATGTGAACGTCTAGTTTCATCGTTGAACACGAAAGACTCATATATAGTTAGAGAAGGTGATCCAGTGAGAGAGATGCTTTTTATCATCAGAGGAAGTATAGAAAGTTCTACAACAGATGGTGGTAGAACAGGATTCTTCAATTCAATCACACTAAAACCGGGCGACTTTTGTGGCGAAGAATTGTTAACATGGGCTTTGATGCCAGCATCTAGTCTTAGCCTTCCATCTTCTACAAGAACTGTAAAGTCAATAACTGAAGTAGAAGCATTTGCACTTAGAGCAGAAGATCTCAAATTTGTGTCGAGCCAATTTAAGCGCCTTCATAGCAAGAAACTGCAACATGCTTTCAGATACTATTCTCATCAGTGGAGAGCTTGGGGGGCTTCTTTTATACAAGCGGCGTGGAGGCGTCACCGCAAGCGACAATTGGCAATGGAGTTGTTGGAAAAAGAGAACTTGTATGATGAAGAGAGTGGTGGAGGAGAAAGTTCCATGGGAATGGAGGATAATACTAGCCATGGACAAAATTTTGGGGCTACATTTTTGGCTTCAAAATTTGCTGCTAACACTAGGAAAGGAGCAGTTAAAAAGGTTGCAATAATTCCTGATAGTAGCAGTTTGAAGATGCCTAAGATGTTCAAGCCAACTGAGCCTGATTTCTCAACATTTCAAGATTAA 1824 0.3969 MQTDLVLGVVVTFLRTVADLFFLFHVVLKFRTAFNSPTSHVYGRKELISDPTEIARRYLKHDFIIDLLATLPLPQIVIWFIVPATKNSTAAHVNHTLSLIVLIQYIPRLFQIFPLQKRILKTSGLIAKTALAGALYNLGFYMLASHVLGATWYVSSIQRQYECWRIMCKKEMNRTHSPSCNPSFLDCTSLSNRERQVWFRRTRVLTNCDALNDKNHFQFGMFADAFTDHVSSSKFIQKYFYCLWWGLKNLSSYGQNIQTSTYSGETLFCSFICIAGLILFAHLIGNMQNYLQSSTARLEEWRLRQKDTEEWMNHRQLPPELQERVRRFVQYKWLATRGVDEEAILKSLPVDLRRQIQRHLCLDIVRRVPFFGQMDDQLLDAICERLVSSLNTKDSYIVREGDPVREMLFIIRGSIESSTTDGGRTGFFNSITLKPGDFCGEELLTWALMPASSLSLPSSTRTVKSITEVEAFALRAEDLKFVSSQFKRLHSKKLQHAFRYYSHQWRAWGASFIQAAWRRHRKRQLAMELLEKENLYDEESGGGESSMGMEDNTSHGQNFGATFLASKFAANTRKGAVKKVAIIPDSSSLKMPKMFKPTEPDFSTFQD 607
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g02909 607 SUPERFAMILY cAMP-binding domain-like 299 495 IPR018490 -
Tsu08g02909 607 Pfam Ion transport protein 10 297 IPR005821 GO:0005216|GO:0006811|GO:0016020|GO:0055085
Tsu08g02909 607 SMART cnmp_10 370 501 IPR000595 -
Tsu08g02909 607 Pfam Cyclic nucleotide-binding domain 393 480 IPR000595 -
Tsu08g02909 607 SUPERFAMILY Voltage-gated potassium channels 5 292 - -
Tsu08g02909 607 ProSiteProfiles cAMP/cGMP binding motif profile. 370 444 IPR000595 -
Tsu08g02909 607 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 16-RELATED 1 605 - -
Tsu08g02909 607 CDD CAP_ED 370 501 IPR000595 -
Tsu08g02909 607 Gene3D Jelly Rolls 368 488 IPR014710 -
Tsu08g02909 607 Gene3D Helix hairpin bin 296 361 - -
Tsu08g02909 607 PANTHER CYCLIC NUCLEOTIDE-GATED ION CHANNEL 15-RELATED-RELATED 1 605 - -
Tsu08g02909 607 Gene3D - 5 294 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu08g02909 Tsu-Chr8 44377457 44380222 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu08g02909 1 602 Ion Channels AT3G48010 66.935 0.0 863
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu08g02909 K05391 - gmx:100783672 1062.75