Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g02907 ATGGAGAGTCCTCCTTCTCATTCTTGTGTCATTGTTGCTTGTGATGCAACAAGGGACCGCAATGAGCACGATATCAAGCATGTTATTGATCATGTTCGTGCAAGGGGTATCATTCTCTCTTCTGGTGACCGGTTGCTCGTCCTCTGCATCTTGCATAAGGTGTCTCACCCAATGGGATACCAGACATTAGCATCTCCTGAATATTTTGCCGGCACCAACTTCCGTGCAATGGAGGAAGAAGTCAGAAAAAAAGTGCATGTTTATGCAAATGAGCTTTTAtcaagtcttgaagattttgaaAACCAAGGGGTTACTGTCGACATTCAAGTCACCGCAGGTTTTCCAATTAGACAGattattttacaagaggttaaAAACTATAATGCATCTTGGATTATACTTGATAGATACCATCGGCGCGACATGAGGTACCACCTTAACAAGATACCATGTAAGGTAGCATTAGTTAAAGATGATTTGTCTGTGGATATATGGAGATCTCACAATGCAAATGACATAAATGTCACAGAAACAAAACCTGTCTTTTCTTTGTCCAAGTTTGTATCATTATCAGATTGCCATAGCATGCAAGACATTGAACATTCAATTATATCTTGCAAAAGTTATCCACATTCCATAGCTTCTTCTGATAGCTCTGGCACCATTAAGAGCTATTCAATGCATTCATATGCCAACAGTTCATTACATTCTGGATCTTCTTCTAAGCATGAAAGATCAGGTACAATAAGCACCAAAGGGGAATATAGAAATCTCACAACATCTCAGATTGGTCAAAAGCAAAACCAATGTGTCTTTCTACCAAAATCTTCAGATGCACCAATTCTATGTGCAGGTTGTGGAATAAGGACAGAGTTATCAATCAAAGAGTCAAATAGGTTTACCTATCCTGAAATACAGCTTGCAACAAATGAATTTTCAAAGGATAACTTAATAGGTGAAGGTGGATATGGTCATGTATATAAGGGTGTACTTAAAGATGGACAACAAATTGCTGCAAAAGTAAGGAAACAAGAAAGTACACAAGGGTTTTCTGAATTTCATTCAGAAGTATATGTCTTGAGTTTTGCTAGACACAAGAATATAGTGATGCTGTTAGGTTACTGttgcaaagaaaataaaaatattcttatatatgaatatatttgtAACAAGTCTCTTCATTGGCATTTATTTGaaAATAGTGAAACAGTTCTTGATTGGCCTCAAAGATATGGTATTGCACTTGGGACTGCAAAGGGATTGCGTTTTCTACATGAGGAGTGTAGAGGTGGTCCTGTTATTCATAGGGACATGCGACCAAGCAATATACTTCTCACTCATGATTTTGTTCCCATGCTGGGTGACTTTGGCCTTGCCAAATGGAATACTGGTGATGATCCTCTTCAAACAAGGATAATGGGTACATTTGGATACCTTGCTCCTGAGTATGCTGAAGATGGCATTGTTTCCGAAGGAACAGATGTATATTCTTATGGTGTCACTCTGTTACAATTGATATCAGGACGCCAAGTAGGCAATTTCAATAATCCAGACCAGCAACAACAATCTCTCCGACAATGgGCTGAACCAATcattgagaagttgactttaCAAGAACTGATTGATCCTCGTTTGGGAGAATCGTATGATACATATGAATTATACCTTATGGCTAAAGCCGCATATTTCTGTATGCAAAGGAAGCCTGAGATGCGACCATCAATGAGAGAGGTTGTGCGTTTTCTTGAGGGAGAAAGTTATCAATTCCAGACCCTGGAACTGGAAGGTCAATTTGTACCAAACCATAACATTTGA 1815 0.3725 MESPPSHSCVIVACDATRDRNEHDIKHVIDHVRARGIILSSGDRLLVLCILHKVSHPMGYQTLASPEYFAGTNFRAMEEEVRKKVHVYANELLSSLEDFENQGVTVDIQVTAGFPIRQIILQEVKNYNASWIILDRYHRRDMRYHLNKIPCKVALVKDDLSVDIWRSHNANDINVTETKPVFSLSKFVSLSDCHSMQDIEHSIISCKSYPHSIASSDSSGTIKSYSMHSYANSSLHSGSSSKHERSGTISTKGEYRNLTTSQIGQKQNQCVFLPKSSDAPILCAGCGIRTELSIKESNRFTYPEIQLATNEFSKDNLIGEGGYGHVYKGVLKDGQQIAAKVRKQESTQGFSEFHSEVYVLSFARHKNIVMLLGYCCKENKNILIYEYICNKSLHWHLFENSETVLDWPQRYGIALGTAKGLRFLHEECRGGPVIHRDMRPSNILLTHDFVPMLGDFGLAKWNTGDDPLQTRIMGTFGYLAPEYAEDGIVSEGTDVYSYGVTLLQLISGRQVGNFNNPDQQQQSLRQWAEPIIEKLTLQELIDPRLGESYDTYELYLMAKAAYFCMQRKPEMRPSMREVVRFLEGESYQFQTLELEGQFVPNHNI 604
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g02907 604 MobiDBLite consensus disorder prediction 234 253 - -
Tsu08g02907 604 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 37 158 - -
Tsu08g02907 604 Gene3D HUPs 10 158 IPR014729 -
Tsu08g02907 604 Pfam Protein kinase domain 313 579 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu08g02907 604 PANTHER OS01G0253100 PROTEIN 8 594 IPR045271 GO:0004714|GO:0006468
Tsu08g02907 604 SUPERFAMILY Protein kinase-like (PK-like) 296 586 IPR011009 -
Tsu08g02907 604 CDD USP_Like 10 156 - -
Tsu08g02907 604 Gene3D Phosphorylase Kinase; domain 1 287 387 - -
Tsu08g02907 604 ProSiteProfiles Protein kinase domain profile. 312 590 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu08g02907 604 CDD STKc_IRAK 318 584 - -
Tsu08g02907 604 ProSitePatterns Protein kinases ATP-binding region signature. 318 340 IPR017441 GO:0005524
Tsu08g02907 604 Gene3D Transferase(Phosphotransferase) domain 1 389 595 - -
Tsu08g02907 604 ProSitePatterns Tyrosine protein kinases specific active-site signature. 433 445 IPR008266 GO:0004672|GO:0006468
Tsu08g02907 604 PANTHER RECEPTOR-LIKE KINASE 8 594 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu08g02907 Tsu-Chr8 44369902 44373517 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu08g02907 231 585 Trihelix Transcription Factor Family AT4G32710 41.463 4.97e-78 260
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_PERK-2 Tsu08g02907 Pkinase 1.6e-39 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu08g02907 - - vun:114163670 961.829