Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g02901 ATGGTGGTTGAGATTTTCTCTGAATATCCTCCACTTGGCCATTTTGCTGCGAGGGACATGCGTCAAACTGTGGCTGTTGGAGTTATCAAGGCTGTGGAGAAGAAGGACCCCGGCGGAGCATggagGGGAGATTGCAAGAAAAAAGCTAATGTTTCCAGAAGCAGAAACAAAAAAGTAGTCGGTCTTCATTCtcaattcttcatcttcatcttctcttctcttctcaatctCACTTTCTTTCTCATACATATACACATCTTCAATCATAATCGCTTCTTAATTCTGATTCtcaattcttcttcatcttcttctttttcacacCTAAGAAGGTTGATACTAAAGGATTTGACTCATTGGAGGCTTAGAGATATGGCTAATAATGCTGCTGCTTGTGCTGAGAGAGCTACTAGTGACTTGCTCATTGGACCAGATTGGGCTATCAACATAGAATTGTGTGATATAATTAACATGGACCCGAGGCAAGCAAAGGATGCATTGAAGATACTTAAGAAGCGTTTGGGCAGTAAAAATCCCAAAACACAGCTCCTGGCCCTTTTTGTACTGGAGACCCTTAGTAAAAACTGCGGTGAAAGTGTATTTCAGCAGATCGTTGAGCGTGATATATTGCATGAAATGGTTAAGATAGTGAAGAAGAAGCCAGACTTAAGTGTGAGGGAAAAGATACTGATTTTAATTGATGCATGGCAAGAAGCTTTTGGAGGTCCAAGTGGAGTTTTCCCCCAATACTATGCAGCATATAATGAACTCAGGTCTGCTGGAGTTGAATTTCCACCAAGAGAAGAAAATAGTGTGCCATTCTTCACGCCTCCTCAAACTCAGCCAATTATTCATTCTGCTGTAGAATTTGATGATGCTGCTATTCAGGCTTCTCTTCAGTCAGATGCATCTGACCTTAGTGCACTAGAGATTAAAAATGCCCAAGGGTTAGCCGATGTTTTGACAGAAATGCTCAGTGCCTTGAATCCGAAAGACCCTGAGGGCGTGAAGGAGGAAGTGATCGTTGATCTTGTTGACCAGTGCCGTTCTTACCAGAAACGTGTGATGCTTCTTGTGAACAATACTGTGGATGAGGACCTTTTAGGTCTAGGACTGGCATTGAATGACAGCCTTCAACGAGTACTCCGTCAACACGACGATATTGCGAAAGGAACTGCTAATTCAGGTGCAAGAGAAGTAGAAACTCCAGTTCTGCCGCTTGTTAATGTAAACCATGAAGATGATGACTCGGACGATGATTTTGGTCAATTAGCCCATAGGTCATCTAGAGATGCTCATGCACAGAATCGGAAACCAGAGCCAGTGAGGATAAACTCATTTATTCCTCCCCCACCAGCATCAAAGAAGCCAGTCTACTCTGGCACTGGCATGGTTGACTATCTTAGTGGTGATGCATACAAGGCTGAAGGATCATTTGAAAACTCAGAACCAACTTCATATGCAGCTCCTCGTCATTCTAGCCCTAATCCGGCCCCACCAACTATTCCAACAGAGTCGTCAACCTATCCTCATGCCACTACCACCTCATCACCAGTTTTTGACAGGCAGCCTATATATGATGAGCCATCCCCCATGAAGTCTTCAGAACAGCTGCCTCCAGCTCCTTGGGATACGCAAGCTCCTGTTGTTATTCCACCCCCACCTTCAAAGTATAATCAGAGACAACAGTTTTTCGATCAAAAAGTTTCATCTCATTCAAGTAATGGGTCAAGTTCGTCTTCTGACAGCTTGGTGGGACAAACTCAAAATCTCTCTCTGAATTCATCCACCCCAACCAAAGAACAGAAGCCAGAAGATGCCCTTTTCAAGGATCTAGTCGATTTCGCAAAATCGAAAACCTCTTCATCTTCCAAACCCAATAATAGGTCGTATTGA 1893 0.4194 MVVEIFSEYPPLGHFAARDMRQTVAVGVIKAVEKKDPGGAWRGDCKKKANVSRSRNKKVVGLHSQFFIFIFSSLLNLTFFLIHIHIFNHNRFLILILNSSSSSSFSHLRRLILKDLTHWRLRDMANNAAACAERATSDLLIGPDWAINIELCDIINMDPRQAKDALKILKKRLGSKNPKTQLLALFVLETLSKNCGESVFQQIVERDILHEMVKIVKKKPDLSVREKILILIDAWQEAFGGPSGVFPQYYAAYNELRSAGVEFPPREENSVPFFTPPQTQPIIHSAVEFDDAAIQASLQSDASDLSALEIKNAQGLADVLTEMLSALNPKDPEGVKEEVIVDLVDQCRSYQKRVMLLVNNTVDEDLLGLGLALNDSLQRVLRQHDDIAKGTANSGAREVETPVLPLVNVNHEDDDSDDDFGQLAHRSSRDAHAQNRKPEPVRINSFIPPPPASKKPVYSGTGMVDYLSGDAYKAEGSFENSEPTSYAAPRHSSPNPAPPTIPTESSTYPHATTTSSPVFDRQPIYDEPSPMKSSEQLPPAPWDTQAPVVIPPPPSKYNQRQQFFDQKVSSHSSNGSSSSSDSLVGQTQNLSLNSSTPTKEQKPEDALFKDLVDFAKSKTSSSSKPNNRSY 630
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g02901 630 Gene3D - 298 396 IPR038425 -
Tsu08g02901 630 MobiDBLite consensus disorder prediction 475 607 - -
Tsu08g02901 630 Gene3D Translation factors 1 33 - -
Tsu08g02901 630 PANTHER TOM1-LIKE PROTEIN 124 629 IPR044836 GO:0035091|GO:0043130|GO:0043328
Tsu08g02901 630 ProSiteProfiles VHS domain profile. 135 264 IPR002014 GO:0035091|GO:0043130
Tsu08g02901 630 PIRSF TOM1 120 630 IPR014645 -
Tsu08g02901 630 CDD VHS 133 258 - -
Tsu08g02901 630 Pfam GAT domain 316 390 IPR004152 GO:0035091|GO:0043130
Tsu08g02901 630 MobiDBLite consensus disorder prediction 418 437 - -
Tsu08g02901 630 SUPERFAMILY GAT-like domain 268 390 - -
Tsu08g02901 630 Gene3D - 122 281 IPR008942 -
Tsu08g02901 630 ProSiteProfiles GAT domain profile. 300 389 IPR004152 GO:0035091|GO:0043130
Tsu08g02901 630 PANTHER TOM1-LIKE PROTEIN 4 124 629 - -
Tsu08g02901 630 MobiDBLite consensus disorder prediction 504 520 - -
Tsu08g02901 630 SUPERFAMILY ENTH/VHS domain 122 265 IPR008942 -
Tsu08g02901 630 CDD GAT_GGA_like_plant 309 387 - -
Tsu08g02901 630 SMART VHS_2 128 260 IPR002014 GO:0035091|GO:0043130
Tsu08g02901 630 MobiDBLite consensus disorder prediction 555 601 - -
Tsu08g02901 630 SUPERFAMILY EF-Tu/eEF-1alpha/eIF2-gamma C-terminal domain 1 32 IPR009001 -
Tsu08g02901 630 Pfam VHS domain 132 239 IPR002014 GO:0035091|GO:0043130
Tsu08g02901 630 MobiDBLite consensus disorder prediction 409 458 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu08g02901 Tsu-Chr8 44236843 44245458 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu08g02901 1 40 Eukaryotic Initiation Factors Gene Family AT1G07930 85.000 1.51e-14 73.9
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu08g02901 - - gmx:100792343 784.252