Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g02897 ATGTCAGACCCTGGATGGCGACAAGCTATGGTTGACGAGATGGCAGCTTTACACTCTAATGGTACTTGGGATTTGGTTCCATTACCCGATGGAAAAACTACAGTGGGTTGTCGATGGGTCTACACAGTTAAAGTTGGGCCAAATGGAAAGATTGACCGCTTAAAAGCTCGGCTCGTGGCCAAAGGATACACACAAATCTTCGGCCTTGACTATGGAGATACTTTTTCTCCCGTTGCCAAGATTGCATCTGTCTGCCTTTTTCTTGCCATAGCTGCTATGCATCAATGGCCACTCCATCaattggacaaaaaaaatgccTTCCTACATGGTGAACTACAAGAGGAAGTGTACATGGCACAACCACCAGGATTCACTGTTAGTGGTGCTTCTCACCTTGTTTGTCGGCTTCGCCGCTCACTTTATGGTTTGAAACAATCTCCCCGAGCTTGGAAAGAATTGCAACCCATTTCCTTATGTAATGCTTTATATAAAATGGTGTCCAAGGTGCTCGCAAATAGGTTGAAAGAATTTCTAGATAAATGTGTAGCAGAGGAACAATCAGTATTTGCGGAAGGAAGATCTATCATAGACAATGCTCTTATTGCAATTGAGATAGTATATGCTCTTAAACGCAAAAATAGAGGCGTTAGAGGTGATCTGGCGCTTAAAATAGACATAAGTAAAGCCTACGATAAAGTAAACTGGGGATTCATGAGGGAAGGAATTTCAGCTCTTATAAAGAATTATGTGGCTCGAGGAGATATCCATGGGGTGAAAATTTGTAGAGGGGCACCTCCGGTGTCCCATCTACTCTTTGCTGATGACTGTTTCTTATTTTGCAAGTCCAATTTAGATGAGACGAGAAAGCTAATGAATATCCTTAAGACATATGAGGAAGCGTCCGGCCAGGAAATAAATATGGCAAAGTCGGAAGTCTTTTTTAGTAGAAACCTCAGCATGGTGGCTCAAGAGGATCTCTCTAGACTCATGGGAGTTAGACATGTGTTAGGTACGGGAACCTACGTAGGCTTACCATCCATGGTGGGAAGGAATACAACCATAAAGGAGATTGAGAGGATGCTTAATTCATTTTGGTGGGGAGGAGGTTCTAGCGCAGGAGGAATTAAATGCTTAGCATGGGATAAAATGTCATACCCAAAAGCATATGGTGGCTTGGGTTTTCAAAATTTACATCATTTCAACATGGCTTTGGTCGCTAAGCAAGGTTGGAATCTTATATCAAAACCAAACACTCTTGTGGCAAAGGTGTATAAAGCAAGATGGAGGATAGGAGATGGTACACAAATCAATATAATGAATGAACCACGGTTGAGGAAAGAGGATGGAAATTGGATGCAATCGGCACAAGAACAAGAGACGGAAGTTCCCTTGCTTGTTAATGAATTCATTCCTAATGGCACTGTTCATGAGCATTTGCATCATCAAAACCATTCTATAAAGCTAACATGGAAAACAAGATTAAGAATAGCAAAAGAAACTGCTAGTGTCCTGGCATACTTGCATTCTGCTGATTCTACAGCTATCATACATAGAGATGTGAAATCTACAAATATACTCCTAGATCACAAACTACAAAGTCTTGGAGTTGTCCTAGCAGAGTTGCTGACAGGAAAGAAGGCACTATCTTTTAACAGGCCAGAGGTTGAAAGAAACCTAGCTTCGTACTTTGATTCTTCTATGAAAGCGGTCTTCACTCTTGAGGAGCTAAACGAAGCTACCAACAACTTTGATGAAGGAAAGATTCTAGGACAAGGTGGTCATGGAACTGTTTACAAAGGAGTTTTACAAGATAACAAAATTGTAGCGATAAAAAAGTCCAAAATCAGTGACCCAAAACAGGTTGAGCCGTTCATCAATGAAGTGATCATTCTTTCCCAAATCAACCATAGAAATGTGcTAACATGGAAAACAAGATTAAGAATAGCAAAAGAAACTGCTGGTGTCCTGGCATACTTGCATTCTGCCGATTCTACACCTATCATACATAGAGATGTGAAATCTACAAATATACTCCTAGATCACAATCTCACTGCAAAAGTTTCTGACTTTGGAGCTTCAAGGATTGTTCCTCTTGATCATAGTCAGATAAACACTTTAGTCCAGGGAACATTGGGGTATTTTGACCCAGAATACTTCCACACAAGTCAGCTAATAGAGAAGAGTGATGTTTATAGTTTTGGAGTAGTTTCAAGAATTACACAACTAGTTTCAAGATGA 2238 0.4026 MSDPGWRQAMVDEMAALHSNGTWDLVPLPDGKTTVGCRWVYTVKVGPNGKIDRLKARLVAKGYTQIFGLDYGDTFSPVAKIASVCLFLAIAAMHQWPLHQLDKKNAFLHGELQEEVYMAQPPGFTVSGASHLVCRLRRSLYGLKQSPRAWKELQPISLCNALYKMVSKVLANRLKEFLDKCVAEEQSVFAEGRSIIDNALIAIEIVYALKRKNRGVRGDLALKIDISKAYDKVNWGFMREGISALIKNYVARGDIHGVKICRGAPPVSHLLFADDCFLFCKSNLDETRKLMNILKTYEEASGQEINMAKSEVFFSRNLSMVAQEDLSRLMGVRHVLGTGTYVGLPSMVGRNTTIKEIERMLNSFWWGGGSSAGGIKCLAWDKMSYPKAYGGLGFQNLHHFNMALVAKQGWNLISKPNTLVAKVYKARWRIGDGTQINIMNEPRLRKEDGNWMQSAQEQETEVPLLVNEFIPNGTVHEHLHHQNHSIKLTWKTRLRIAKETASVLAYLHSADSTAIIHRDVKSTNILLDHKLQSLGVVLAELLTGKKALSFNRPEVERNLASYFDSSMKAVFTLEELNEATNNFDEGKILGQGGHGTVYKGVLQDNKIVAIKKSKISDPKQVEPFINEVIILSQINHRNVLTWKTRLRIAKETAGVLAYLHSADSTPIIHRDVKSTNILLDHNLTAKVSDFGASRIVPLDHSQINTLVQGTLGYFDPEYFHTSQLIEKSDVYSFGVVSRITQLVSR 745
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g02897 745 SMART serkin_6 583 744 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu08g02897 745 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE PROTEIN 459 531 - -
Tsu08g02897 745 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 640 736 IPR045274 GO:0007166
Tsu08g02897 745 SUPERFAMILY DNA/RNA polymerases 149 317 IPR043502 -
Tsu08g02897 745 ProSitePatterns Protein kinases ATP-binding region signature. 589 612 IPR017441 GO:0005524
Tsu08g02897 745 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE PROTEIN 533 568 - -
Tsu08g02897 745 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE PROTEIN 640 736 - -
Tsu08g02897 745 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE PROTEIN 568 639 - -
Tsu08g02897 745 SUPERFAMILY Protein kinase-like (PK-like) 458 549 IPR011009 -
Tsu08g02897 745 Pfam Reverse transcriptase (RNA-dependent DNA polymerase) 20 153 IPR013103 -
Tsu08g02897 745 ProSitePatterns Serine/Threonine protein kinases active-site signature. 667 679 IPR008271 GO:0004672|GO:0006468
Tsu08g02897 745 Pfam Protein kinase domain 647 736 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu08g02897 745 Pfam Protein kinase domain 584 642 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu08g02897 745 Pfam Protein kinase domain 461 530 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu08g02897 745 CDD RT_nLTR_like 144 345 - -
Tsu08g02897 745 Gene3D Phosphorylase Kinase; domain 1 546 641 - -
Tsu08g02897 745 Gene3D Transferase(Phosphotransferase) domain 1 420 532 - -
Tsu08g02897 745 Gene3D Transferase(Phosphotransferase) domain 1 642 739 - -
Tsu08g02897 745 SUPERFAMILY Protein kinase-like (PK-like) 559 736 IPR011009 -
Tsu08g02897 745 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 533 568 IPR045274 GO:0007166
Tsu08g02897 745 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 459 531 IPR045274 GO:0007166
Tsu08g02897 745 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 568 639 IPR045274 GO:0007166
Tsu08g02897 745 SUPERFAMILY DNA/RNA polymerases 20 151 IPR043502 -
Tsu08g02897 745 ProSiteProfiles Protein kinase domain profile. 583 745 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu08g02897 Tsu-Chr8 44209789 44218318 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu08g02897 570 736 Receptor kinase-like Gene Family AT1G21230 57.843 6.94e-67 233
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK_LRK10L-1 Tsu08g02897 RVT_2 2.1e-44 CL0027
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu08g02897 - - nsy:104221828 253.832