Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g02894 ATGGCTGCACACATAAAAGAACTTGTACTGATTgcggttgttgttgttctttatACGAAAGCATCAACTCAACCTATGTCACTACCAAACTGCACATCAAAGTGTGGTTCTGTCACCATTCCGTACCCATTTGGAACCACCAAAAATTGTTCACTAGACAACACATTTCTCATCAATTGCAACCAAATGTCACACGTACCATTCTTCCAAGATGAATATTCTGATTATAATATAAGTGTTCTAAACATCTCATTCGATGGTGAGCTACGTGTTGCATGGCCAATAGCCAGCGATTGCTACGCTGAAATGGGTAAACTTGTGAACGAAACAACCCAAGATATCAGCCTAACAAATTTTCACATCTCTTCAACTCGAAACAAGTTGATAGCAGTTGGTTGTGACACATTTGGAGTATTAGACGCATATGATTATAGGGAACATCACTATGCCACAGGATGTGTGGCTTACTGCAACAAGCTTAATGATATAGAGGCCAATCAATCTTGTTCAGGAATTGGTTGTTGCGAGATTTCAATACCCCAAGGTCACTTGTTAAAACAAGTAATCTATGGTTCTTCGACCATATTGAACAATAGTCACAAATCAGTATATGACTTCAATCCATGTGGTTATGCGTTTTTGGTTGAAAATGGAAACTACAACTTTAAACTCACAGACATCATGAGTTTGAAGAAGGAGTTTCCTGTGGTGTTGAATTGGGCAGTGGGGAACCAAACATGCCAGCAAGCTAAGAAGAATCTTTCCAATTATGCATGTAAGGCCGACAAAAGTACATGTCACGACGCAGAAACCGACAAATCTGGTGGTTACCTTTGTAGATGCTTTGACGGATATCGGGGAAATCCATACCTCCATCATGATGGTTGTCaagATATTAATGAATGCATGGAGCCCAATGATTGTGCTAAGGAGGCAACATGCGAAAATCTTCTTGGAAGTTATCATTGTTTATGCCCGATAGGATACAAGGGAGATGGGAAAAATAAAGGAACAAGATGCAGTAAAAGGAAAGAGATCACAAAGACCATCTCATTGAGTGTCAGCTTAAGCCTCATAGCACTATTGGTTGCATATTTTGCATATTTTGcattgaagaaaagaaagttcATGCAACTTAAAGAAAAATTCTTTCAACAAAATGGTGGATTACTGCTACAACAACAGATAGGGAGGCATGGTGGATCAACTGAAATGGCTAAAGTCTTCACTCTTGAGGAGCTAAAAGAAGCTACCAACAACTTCGATGAAGGAAAGATCCTTGGAGAAGGAGGTCAGGGAACAGTTTACAAAGGAGTTTTACAAGATAAAAGAATTGTAGcgataaaaaaatccaaaatcaatGACCCAAACCAGATTGAGCCATTCATCAATGAAGTGGTCATTCTTTCCCAAATCAACCATAGAAATGTGGTAAAGCTTTTTGGTTGTTGTTTAGAGACAGAAGTTCCCTTGCTTGTTTATGAATTCATTCCAAATGGAACCGTTCATAAGCATTTGCATGATAAAGAAAAATCTATAAAGCTTACGTGGAAAATAAGATTAAGAATTGCAAAAGAAACTGCAGGTGTCCTGGCATACTTACATTCTGCCGCTTCTACGCCTATCATACATAGAGATGTGAAATCTACAAACATACTCCTAGATTGCAATCTTATTGCAAAAGTTTCTGACTTTGGAGCTTCAAGGATTGTTCCTCTTGATCATAGTCAGATAAACACTCTAGTGCAGGGGACATTAGGGTATCTTGACCCAGAATACCTCCACACAAGCAAGTTAACAGAGAAGAGTGATGTTTATAGTTTTGGAGTTGTCCTAGCGGAGCTGTTGACAGGAAAGAAAGCACTATCTTTTAATAAGCCAGAGGTTGAAAGAAACCTTGCTTCGTACTTTAGTTCTTCAATGAAAGAAGGCCGGTTTCATCATATTTTGGACCAAAATACAGATGAAGAAAATATTAAGCAACTAAAAGAAGTTGCCCATATTGCAGAACGATGTTTACGGGTGATGGGCGAGGATAGACCCACCATGAAAGAAGTGGCAACGGAACTAGAGGGAATATTAGTTATTGTAGAGAATCATCGGGCAAGTGAGAATTTGCCTTCAGAAGAGACTGAGAACTTGCTCAAAACAGCACAATCTGTTAAAAATGTTGAAGATGATGGCATTGGTGGAAGTGGCATTAATTCTTCTGATCCATACAACTTAAACCAGATTTCAATGTTATTGGTGGAAGATGATTAG 2262 0.378 MAAHIKELVLIAVVVVLYTKASTQPMSLPNCTSKCGSVTIPYPFGTTKNCSLDNTFLINCNQMSHVPFFQDEYSDYNISVLNISFDGELRVAWPIASDCYAEMGKLVNETTQDISLTNFHISSTRNKLIAVGCDTFGVLDAYDYREHHYATGCVAYCNKLNDIEANQSCSGIGCCEISIPQGHLLKQVIYGSSTILNNSHKSVYDFNPCGYAFLVENGNYNFKLTDIMSLKKEFPVVLNWAVGNQTCQQAKKNLSNYACKADKSTCHDAETDKSGGYLCRCFDGYRGNPYLHHDGCQDINECMEPNDCAKEATCENLLGSYHCLCPIGYKGDGKNKGTRCSKRKEITKTISLSVSLSLIALLVAYFAYFALKKRKFMQLKEKFFQQNGGLLLQQQIGRHGGSTEMAKVFTLEELKEATNNFDEGKILGEGGQGTVYKGVLQDKRIVAIKKSKINDPNQIEPFINEVVILSQINHRNVVKLFGCCLETEVPLLVYEFIPNGTVHKHLHDKEKSIKLTWKIRLRIAKETAGVLAYLHSAASTPIIHRDVKSTNILLDCNLIAKVSDFGASRIVPLDHSQINTLVQGTLGYLDPEYLHTSKLTEKSDVYSFGVVLAELLTGKKALSFNKPEVERNLASYFSSSMKEGRFHHILDQNTDEENIKQLKEVAHIAERCLRVMGEDRPTMKEVATELEGILVIVENHRASENLPSEETENLLKTAQSVKNVEDDGIGGSGINSSDPYNLNQISMLLVEDD 753
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g02894 753 CDD EGF_CA 298 332 - -
Tsu08g02894 753 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 13 725 IPR045274 GO:0007166
Tsu08g02894 753 Pfam Calcium-binding EGF domain 298 340 IPR001881 GO:0005509
Tsu08g02894 753 Pfam Protein kinase domain 422 687 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu08g02894 753 Pfam Wall-associated receptor kinase galacturonan-binding 31 87 IPR025287 GO:0030247
Tsu08g02894 753 ProSiteProfiles EGF-like domain profile. 298 341 IPR000742 -
Tsu08g02894 753 SMART egf_5 301 341 IPR000742 -
Tsu08g02894 753 SMART egf_5 246 297 IPR000742 -
Tsu08g02894 753 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 16-RELATED 13 725 - -
Tsu08g02894 753 ProSiteProfiles Protein kinase domain profile. 421 694 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu08g02894 753 Gene3D Laminin 257 336 - -
Tsu08g02894 753 Gene3D Transferase(Phosphotransferase) domain 1 497 715 - -
Tsu08g02894 753 Gene3D Phosphorylase Kinase; domain 1 397 496 - -
Tsu08g02894 753 SUPERFAMILY Protein kinase-like (PK-like) 404 691 IPR011009 -
Tsu08g02894 753 ProSitePatterns Calcium-binding EGF-like domain signature. 298 323 IPR018097 GO:0005509
Tsu08g02894 753 ProSitePatterns Serine/Threonine protein kinases active-site signature. 542 554 IPR008271 GO:0004672|GO:0006468
Tsu08g02894 753 SMART egfca_6 298 341 IPR001881 GO:0005509
Tsu08g02894 753 CDD STKc_IRAK 427 693 - -
Tsu08g02894 753 SUPERFAMILY EGF/Laminin 297 335 - -
Tsu08g02894 753 ProSitePatterns Aspartic acid and asparagine hydroxylation site. 314 325 IPR000152 -
Tsu08g02894 753 SMART serkin_6 421 697 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu08g02894 Tsu-Chr8 44194901 44198731 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu08g02894 5 715 Receptor kinase-like Gene Family AT1G21230 46.648 0.0 604
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK Tsu08g02894 Pkinase 3.5e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu08g02894 - - mtr:MTR_3g088780 938.332