Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g02893 ATGGCTGCTTACATAAAACAGCTTCTCCTGATTGCTGCTGTTGCTGTTCTTTATACAAAAGCAGCAAGTCAACCTATGTCACTACCAAACTGCACATCAAAGTGTGGTTCTGTCACCATTCCCTACCCATTTGGAACCACCAAAAATTGTTCCCTGAACAACACCTTTCTGATCGATTGCAACCAAACATCACAAGTACCTTTCTTGCCGGAGAATAAAAATATACGTGTTATAAACATCTCATTCGATGGTGAGCTGCGTGTTGCATGGCCAATAGCCAGCGATTGCTACACGAAAAAAGGGGAAATTGTGAGCCGAACATTACATGATATCAACATGACACATTTTCACATTTCACCAACTCAAAACAAGTTGATAGGAATTGGTTGTGACACATCTGCAGTATTCGCAGCAGTTGATTCTGAGGGAAACGGCTACCTCGCAGGATGTGTGGCTTACTGCAACAGTCGTAGTGATGTCACGAACAATCAACCTTGTACCGGCATTGGTTGTTGTGAGATTTCAATACCCCAACCCAAAGGTCGTGTGTTTACAGAAGTAGAATATGTTTCTTCGGCCATATTAAACAATAATCACACAGCAGTACATAAGTTCAATCCATGTGGTTATGCTTTTTTGGTCGAAAGTGGAAGCTACAGCTTTTCACGCAGAGACCTCGAGTTGAAGAAGAAGGAGTTTCCTGTGGTGTTGAATTGGGCAGTGGGGAAGAAAACATGCCAGCAAGCTAAGATGAATCATTCAAGTTATGCATGTAATGTAAACAGTACATGTTACGATGCAGGAACCGGCGGTGTTGGTTACTTTTGTACATGCTTTCACGGATATCAGGGAAATCCATACCTCCTTCAAGATGGTTGTCAAGATATTGACGAATGCAAGGAGACGAATAAATGTGTTGTGGGGGCAACATGCAAAAATCTTCTTGGAAGTTACAATTGTTCATGTCCGACAGGATATGAGGGAGACGGGAAAAGTACAGGAAAAGGATGCAGTAAAAAAGTGAGTACCAAACAAAGGAAAGAGATCATATTGATCATCGCATTGAGTGTCAGCTTAAGCCTTGTAGCACTACCGATTGGAAGTTTTTATGCATATTTTGcattgaagaaaagaaaactcattaaacttaaggaacaattttttcaacaaaatggTGGCTTACTGTTACAACAACAGATAGGGAGGCATGGAGGATCAACTGATGCAGCTAAAATCTTCACTCTTGAGGAGCTAAAAGATGCTACCAACAACTTCAATGAAGGAAAGATACTAGGACAAGGAGGTCAAGGAACCGTTTACAAAGGAATTTTACAAGATAAAAGAATTGTAgcaataaaaaaatccaaaattaatgACCCAGACCAGATTGTGCCGTTCATCAATGAAGTGGTCATACTTTCCCAAATCAACCATAGAAATGTGGTAAAGCTTTTTGGTTGTTGTTTAGAGACAGAAGTTCCCTTGCTTGTTTATGAATTCATTTCCAATGGTACTGTTCACGAGCATTTGCATGATCAAAACCAATCTATAAAGCTTACATGGAAAACAAGATTAAGAATAGCAAAAGAAACAGCTGGTGTCCTGTCATACTTACATTCTGCTGCTACTACACCCGTCATACATAGAGATGTGAAATCTACAAATATACTCCTAGATCACAATCTCACTGCAAAGGTTTCTGACTTTGGAGCTTCAAGGATTGTTCCTCTTGATCATAGTCAGATAAACACGCTAGTGCAGGGGACATTGGGGTATCTTGACCCAGAATACCTCCTCACAAGCCAGTTAACAGAGAAGAGTGATGTTTATAGTTTTGGAGTTGTCCTAGCTGAGCTACTGACCGGAAAGAAGGCACTATCTTCTGACAGGTCTGAGGTTGATAGAAACCTTGCGGCGTACTTTGGTTCTTCGATGAAACAGGGTCGGTTACttcatattttagacaaaagtATAGACGAGGGAAATATTGATCAACTAAAAGAGGTTGCCCATATTGCAGAACGATGTTTAAGGGTGAAGGGCGAGGACAGACCTACGATGAAAGAAGTGGCAATGGAACTAGAGGGAATATTAGTTATTGAAAAGCATCGTTGGGGAAGTGACAATTTGTTTTCAGAAGAGACTGAGAATTTTCTCAAAACAACACAATCCGTTAAAAACGTTGAAGATGGCATCGGTGGAAGTGGGATTATTAATTCTTCTGATTCATATAGCTTAAACCAGATCTCACTGTCAATAGGTGGAAGATGA 2271 0.3919 MAAYIKQLLLIAAVAVLYTKAASQPMSLPNCTSKCGSVTIPYPFGTTKNCSLNNTFLIDCNQTSQVPFLPENKNIRVINISFDGELRVAWPIASDCYTKKGEIVSRTLHDINMTHFHISPTQNKLIGIGCDTSAVFAAVDSEGNGYLAGCVAYCNSRSDVTNNQPCTGIGCCEISIPQPKGRVFTEVEYVSSAILNNNHTAVHKFNPCGYAFLVESGSYSFSRRDLELKKKEFPVVLNWAVGKKTCQQAKMNHSSYACNVNSTCYDAGTGGVGYFCTCFHGYQGNPYLLQDGCQDIDECKETNKCVVGATCKNLLGSYNCSCPTGYEGDGKSTGKGCSKKVSTKQRKEIILIIALSVSLSLVALPIGSFYAYFALKKRKLIKLKEQFFQQNGGLLLQQQIGRHGGSTDAAKIFTLEELKDATNNFNEGKILGQGGQGTVYKGILQDKRIVAIKKSKINDPDQIVPFINEVVILSQINHRNVVKLFGCCLETEVPLLVYEFISNGTVHEHLHDQNQSIKLTWKTRLRIAKETAGVLSYLHSAATTPVIHRDVKSTNILLDHNLTAKVSDFGASRIVPLDHSQINTLVQGTLGYLDPEYLLTSQLTEKSDVYSFGVVLAELLTGKKALSSDRSEVDRNLAAYFGSSMKQGRLLHILDKSIDEGNIDQLKEVAHIAERCLRVKGEDRPTMKEVAMELEGILVIEKHRWGSDNLFSEETENFLKTTQSVKNVEDGIGGSGIINSSDSYSLNQISLSIGGR 756
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g02893 756 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 17 720 IPR045274 GO:0007166
Tsu08g02893 756 SMART egfca_6 295 338 IPR001881 GO:0005509
Tsu08g02893 756 CDD EGF_CA 295 329 - -
Tsu08g02893 756 Pfam Calcium-binding EGF domain 295 331 IPR001881 GO:0005509
Tsu08g02893 756 PANTHER WALL-ASSOCIATED RECEPTOR KINASE 2-LIKE ISOFORM X2 17 720 - -
Tsu08g02893 756 SUPERFAMILY EGF/Laminin 294 331 - -
Tsu08g02893 756 SUPERFAMILY Protein kinase-like (PK-like) 411 703 IPR011009 -
Tsu08g02893 756 ProSiteProfiles Protein kinase domain profile. 425 706 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu08g02893 756 ProSitePatterns Calcium-binding EGF-like domain signature. 295 320 IPR018097 GO:0005509
Tsu08g02893 756 Gene3D Phosphorylase Kinase; domain 1 401 500 - -
Tsu08g02893 756 ProSitePatterns Aspartic acid and asparagine hydroxylation site. 311 322 IPR000152 -
Tsu08g02893 756 SMART egf_5 298 338 IPR000742 -
Tsu08g02893 756 SMART egf_5 245 294 IPR000742 -
Tsu08g02893 756 Pfam Protein kinase domain 425 690 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu08g02893 756 Gene3D Laminin 244 337 - -
Tsu08g02893 756 Pfam Wall-associated receptor kinase galacturonan-binding 31 84 IPR025287 GO:0030247
Tsu08g02893 756 ProSiteProfiles EGF-like domain profile. 295 332 IPR000742 -
Tsu08g02893 756 CDD STKc_IRAK 431 697 - -
Tsu08g02893 756 ProSitePatterns Serine/Threonine protein kinases active-site signature. 546 558 IPR008271 GO:0004672|GO:0006468
Tsu08g02893 756 Gene3D Transferase(Phosphotransferase) domain 1 501 713 - -
Tsu08g02893 756 SMART serkin_6 425 706 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu08g02893 Tsu-Chr8 44176443 44179730 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu08g02893 5 719 Receptor kinase-like Gene Family AT1G21230 45.267 0.0 586
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK Tsu08g02893 Pkinase 1.2e-47 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu08g02893 - - mtr:MTR_3g088780 949.118
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu01g00926 01 8472719 8477950 Tsu08g02893 08 44176443 44179730 PCT