Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g02892 ATGGCTGTGGACATAAAACAACTTCTACTGATTGCAGTTGTTGCTGTTCTTTATACAAAAGCATCAACTCAACCGATGTCACTACCAAACTGCCCATCAAATTGTGGTTCTGTCACCATTCCCTACCCATTTGGAACCACCAAAGATTGTTCACTAGACAACACCTTTCTCATCAATTGCAACCAAACATCACACGTACCATTCTTACCAgagaatataaatataagtgttCTAGACATCTCACTAGATGGTGAGCTGCGTGTTGCATGGCCAATAGCCAGCGATTGCTACACTGAAGAGGGTGAATTTGCGAACCAGACAACTCAGAGTATCAACATGACATATTTTCATGTTTCGCCAACTCGAAACAAGTTGATAGCAGTTGGTTGTGACACGGTTGGAGTACTCGTAGGAGCTGATTCTGGGGGAAACAACTACGTGGGAGGATGTGTGGCTTACTGCAACAGGCTTAATGATACCACAGACAATCAATCTTGTTCAGGGATTGGGTGTTGCGATATTTCAATACCTCAAGGTCATATGTTAACGGAAGTAGGCTATGCTTCTTCAGGCATATTTAACAATCACTCATTAGTACATGATTTCAATCCATGTGGTTATGCGTTTTTGGTTGAAAATGGAAACTACAGCTTTTCACGCACAGACCTCAAGTTGAAGAAGAAGGAGTTTTCGGTGTTGTTGGATTGGGCAGTAGGGAAACAAACGTGTCAGCAAGCTAAGAAGAATCTTTCCAATTATGCATGTAAAGCTGACAAAAGTACATGTCACGATGCAGAAACCGACAAATCTGGTGGTTACCTTTGTAGATGCTTACACGGATATGGGGGAAATCCATACCTCCATCATGATGGTTGTGaagATATTGATGAATGCATGGAGACAAATGACTGTGTTGAGGGGGCAACATGCACAAATCTTCTTGGAAGTTACAATTGTTCATGCCCGCCAGGATATGAAGGAGACGGgaaaaatataggaacaaaatGCAGTAAGAAATTGAGTAACAAACAAAGGAAAGACATCATATTGATCATCGCATTGAGTGTCAGCTTAAGCCTCGTAGCACTACTGGTTGGAAGTTTTTATGCATATTTTGCATTGAAGAAAAGAAAGCTCATTAAACTTAAAGaacaattttttcaacaaaacgGTGGCTTACTATTACAACAACAGATAGGGAGGCATGGTGGATCAACTGAAACAGCTAAAGTCTTCACTCTTGAGGAGCTAAAAGAAGCTACCAACAACTTCGATGAAGGAAAGATCCTAGGACAAGGAGGTCAGGGAACAGTTTACAAAGGAGTTTTACACGATAAAAGAATTGTAGcgataaaaaaatccaaaatcaatGACCCAAACCAGATTGAGCCGTTCATCAATGAAGTGGTCATTCTTTCCCAAATCAACCATAGAAATGTGGTAAAGCTTTTTGGTTGTTGTTTGGAGACAGAAGTTCCCTTGCTTGTTTATGAATTTATTCCCAATGGTACTGTTCACGAGCATTTGCATGATCAAAACCAATCTATAAAGCTTACATGGAAAACAAGATTAAGAATAGCAAAAGAAACAGCCGGTGTCCTGTCATACTTACATTCTGCTGCTGCTACACCCATCATACATAGAGATGTGAAATCTACAAATATACTCCTAGATCGCAATCTTATTGCAAAGGTTTCTGACTTTGGAGCTTCAAGGATTGTTCCTCTGGATCATAGTCAGATAAACACTCTAGTCCAGGGGACATTGGGGTATCTTGACCCAGAATACTTCCACACAAGCCAGCTAACAGAAAAGAGTGATGTTTATAGTTTTGGAGTTGTCCTAGCGGAGTTGCTGACAGGAAAGATGGCACTATCTTTTGACAGGCCAGAGGTTGAAAGAAACCTTGCTTCGTACTTTGGTTCTTCAGTGAAAGAGGGTCGGTTACTTCCTATTTTAGACCAAAATATAGATGAAGCAAATATTGAGCAACTAAAAGAGGTTGCCCATATTGCAGAACGATGTTTAAGGTTGAAGGGCGAGGACAGACCCACCATGAAAGAAGTGGCAATGGAACTAGAGGGAATATTAGTTATTGAAGAGCATCGTTGGGGAAGTGACACTTTGTTTTTAGAAGAAACTGAGAACTTGCTCAAAACAGAACAATCTgttaaaaatgttgaaaatggCATCAGTGGAAGTAGCATTAATTCTTCTGATTCATACAGCTTAAAGCAGATTTTAGTGTCAATCGGTGGAAGATGA 2265 0.3898 MAVDIKQLLLIAVVAVLYTKASTQPMSLPNCPSNCGSVTIPYPFGTTKDCSLDNTFLINCNQTSHVPFLPENINISVLDISLDGELRVAWPIASDCYTEEGEFANQTTQSINMTYFHVSPTRNKLIAVGCDTVGVLVGADSGGNNYVGGCVAYCNRLNDTTDNQSCSGIGCCDISIPQGHMLTEVGYASSGIFNNHSLVHDFNPCGYAFLVENGNYSFSRTDLKLKKKEFSVLLDWAVGKQTCQQAKKNLSNYACKADKSTCHDAETDKSGGYLCRCLHGYGGNPYLHHDGCEDIDECMETNDCVEGATCTNLLGSYNCSCPPGYEGDGKNIGTKCSKKLSNKQRKDIILIIALSVSLSLVALLVGSFYAYFALKKRKLIKLKEQFFQQNGGLLLQQQIGRHGGSTETAKVFTLEELKEATNNFDEGKILGQGGQGTVYKGVLHDKRIVAIKKSKINDPNQIEPFINEVVILSQINHRNVVKLFGCCLETEVPLLVYEFIPNGTVHEHLHDQNQSIKLTWKTRLRIAKETAGVLSYLHSAAATPIIHRDVKSTNILLDRNLIAKVSDFGASRIVPLDHSQINTLVQGTLGYLDPEYFHTSQLTEKSDVYSFGVVLAELLTGKMALSFDRPEVERNLASYFGSSVKEGRLLPILDQNIDEANIEQLKEVAHIAERCLRLKGEDRPTMKEVAMELEGILVIEEHRWGSDTLFLEETENLLKTEQSVKNVENGISGSSINSSDSYSLKQILVSIGGR 754
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g02892 754 Pfam Calcium-binding EGF domain 294 336 IPR001881 GO:0005509
Tsu08g02892 754 ProSitePatterns Aspartic acid and asparagine hydroxylation site. 310 321 IPR000152 -
Tsu08g02892 754 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 13 727 IPR045274 GO:0007166
Tsu08g02892 754 ProSitePatterns Calcium-binding EGF-like domain signature. 294 319 IPR018097 GO:0005509
Tsu08g02892 754 Pfam Wall-associated receptor kinase galacturonan-binding 31 87 IPR025287 GO:0030247
Tsu08g02892 754 ProSiteProfiles Protein kinase domain profile. 424 705 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu08g02892 754 Gene3D Phosphorylase Kinase; domain 1 400 499 - -
Tsu08g02892 754 ProSiteProfiles EGF-like domain profile. 294 337 IPR000742 -
Tsu08g02892 754 SUPERFAMILY Protein kinase-like (PK-like) 408 693 IPR011009 -
Tsu08g02892 754 ProSitePatterns Serine/Threonine protein kinases active-site signature. 545 557 IPR008271 GO:0004672|GO:0006468
Tsu08g02892 754 Pfam Protein kinase domain 425 689 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu08g02892 754 SUPERFAMILY EGF/Laminin 294 331 - -
Tsu08g02892 754 Gene3D Laminin 253 331 - -
Tsu08g02892 754 SMART egfca_6 294 337 IPR001881 GO:0005509
Tsu08g02892 754 SUPERFAMILY Growth factor receptor domain 240 326 IPR009030 -
Tsu08g02892 754 CDD STKc_IRAK 430 696 - -
Tsu08g02892 754 CDD EGF_CA 294 328 - -
Tsu08g02892 754 SMART serkin_6 424 697 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu08g02892 754 Gene3D Transferase(Phosphotransferase) domain 1 500 708 - -
Tsu08g02892 754 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 16-RELATED 13 727 - -
Tsu08g02892 754 SMART egf_5 242 293 IPR000742 -
Tsu08g02892 754 SMART egf_5 297 337 IPR000742 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu08g02892 Tsu-Chr8 44164787 44167845 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu08g02892 3 718 Receptor kinase-like Gene Family AT1G21230 44.993 0.0 583
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK Tsu08g02892 Pkinase 2e-46 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu08g02892 - - mtr:MTR_3g088780 986.867
       

Event-related genes

Select Gene_1 Chr_1 Start_1 End_1 Gene_2 Chr_2 Start_2 End_2 Event_name
Tsu01g00928 01 8515602 8518800 Tsu08g02892 08 44164787 44167845 PCT
Tsu08g02892 08 44164787 44167845 Tsu01g00927 01 8487171 8514538 PCT