Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g02890 ATGACACATTTTCAGATCTCACCAACTCGAAACAAGTTGATAGCAGTTGGCTGGGACACGATTGAAGCACTCTCAACAAATGATTCTAGGGGAATCAACTACACCACAGGATGTGTGGCTTTGTGCAACAGGCTTGATGATATCGTGGCCAATCAATCTTGCTCCGGTACTGGTTGTTGCGAGATTTCAATACCCCAAGAGGAGCTAAATGAAGCAACCAACAACTTCAATGAAGACAAGATCCTAGGCCAAGGAGGTCAGGGAACAGTTTACAAAGGAGTTTTACACGATAAAATAATTGTGGCAATACAGAAATCCAAAAACAGTGACCCAAACCAGATTGAGCCGTTCATCAATGAAGTAATTGTACTTTCCCAAATCAACTATAGAAATGTGCTTACATGGAAATCAAGATTGAGAATAGCAAAAGAAACGGAAGGAGTCTTGGCGTACTTGCATTCTGCTGCTTCTACACCAATAATACATAGAGATGTGAAATCTACAAATATACTACTAGACGGCAGTCTCACTGCAAAGGTTTCTGACTTTGGAGCTTCGAGGATCATTCCTCTTGATCAAACTCAGATAACCACTCTAGTGCAAGGGACATTGGGGTATCTTGACCCAGAATACCTCCACACAAGCCAATTAACAAAGAAGAGTGACGTCTATAACTTTGGGGTTGTCCTAGCAGAGCTACTGACAGGAAAGAAGGCACTATCTTTTGGCAGGCCAGAGGTTGACAGAAACCTTGCAGTGTACTTTGTTTCTTCAATGAAAGAGGGCAGGTTACATAATATTTAG 804 0.4179 MTHFQISPTRNKLIAVGWDTIEALSTNDSRGINYTTGCVALCNRLDDIVANQSCSGTGCCEISIPQEELNEATNNFNEDKILGQGGQGTVYKGVLHDKIIVAIQKSKNSDPNQIEPFINEVIVLSQINYRNVLTWKSRLRIAKETEGVLAYLHSAASTPIIHRDVKSTNILLDGSLTAKVSDFGASRIIPLDQTQITTLVQGTLGYLDPEYLHTSQLTKKSDVYNFGVVLAELLTGKKALSFGRPEVDRNLAVYFVSSMKEGRLHNI 267
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g02890 267 SMART serkin_6 76 267 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu08g02890 267 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE PROTEIN 1 66 - -
Tsu08g02890 267 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE PROTEIN 67 133 - -
Tsu08g02890 267 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE PROTEIN 133 267 - -
Tsu08g02890 267 Gene3D Transferase(Phosphotransferase) domain 1 135 263 - -
Tsu08g02890 267 ProSiteProfiles Protein kinase domain profile. 1 267 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu08g02890 267 Gene3D Phosphorylase Kinase; domain 1 43 134 - -
Tsu08g02890 267 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 1 66 IPR045274 GO:0007166
Tsu08g02890 267 SUPERFAMILY Protein kinase-like (PK-like) 62 243 IPR011009 -
Tsu08g02890 267 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 67 133 IPR045274 GO:0007166
Tsu08g02890 267 PANTHER WALL-ASSOCIATED RECEPTOR KINASE-LIKE 21 133 267 IPR045274 GO:0007166
Tsu08g02890 267 Pfam Protein kinase domain 141 241 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu08g02890 267 ProSitePatterns Serine/Threonine protein kinases active-site signature. 160 172 IPR008271 GO:0004672|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu08g02890 Tsu-Chr8 44129853 44131948 Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu08g02890 52 267 Receptor kinase-like Gene Family AT1G21230 55.469 1.50e-86 271
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_WAK_LRK10L-1 Tsu08g02890 Pkinase 1.7e-22 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu08g02890 - - gmx:100798027 310.842