Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g02875 ATGGGAATTGAGGAAGGAACAAGTAGTCTTGGTGATACTGAATGTGCTGAAGGAGTTCAGTGTTTGAAACACAAAGGTATTTCTGATGAGGTGCCGATTTCAAACGGAAATGGGGTTGTTGAAGAGGCTCGATCGAAAAGTGAAGAGGTGAATGATAGGGCTGTAATTTCCAATGGAAATTGTGTTGTTGAAGAGGGTAATTGCTCGAAAAGTGAAGAGGTGAATGATGGGGCTGTAATTTCCAATGGAAATGGTGTTTCTGAAGAGGCTCGATGCTCGAAAAGTGAAGCTGTGAGTGATGGGGTTGTAATTTCCAATGGAAATTGTGTTGCTGAAGAGGTTCGACACTTGGAAAGTGAAGCCATGAGTGATGATGTGCCAATTTCAAATGGAAATGGGGTTGTTGAAGAGGCTCAACACTTGGAAAGTGAAGCCATGAGTAGTGATGAGGCTGTAATTTCTAATGGGAATGGTGTTGCTGAAGAGGCTCGGCACTCGAAGAGTGAAGCTGTGAATGATGGGGCAGTGTTAATGAATATAAATGGTGTTGCTGAAGTGAATGAGGTTTTGAAAAGTGATGGCTTGAATAATGGGGTGAATGTAACTGGTGTTACTGAAGAGGACGGAGGCTTGGGAAGTGAACCCATTAGCAATGGGGCAGTGATTTCAGATGGGTTTGATTCTGGTGACGGGGGATCTTGTGGAGTTACATGTCTTCGAACTTATAAGAGGCGAAAGTATGATAAGTCAAGTTTAAAAGGAAAAGCTCAGGTGGATTGCAACAAATGCGTCGAAACTGCAAGTCATATAGCAGACCAGGTTGCAAAGGAACCCTTTGATGTAACTTTAGGCCTTACTGCATATAATGACCATACACATTGGGGAGATGTTGTACTGAAGCATTTACACCAGTCATTAGGCAGCGTCAATGGTGGCATAGGGGAAGCACAAATTGATCATTTATCTCATAGAACACGGACTGAAGCTAATGGGTATGCACCTGTCATGCAAAATGGATCTTCTAGTGAATCCCATGGCCAGGGTGGTACTGAGACGTGTCAGCGTATGCTGTACGAAGTATTAACCTCACAGAACTTCAATTCATTATGCAAGACTATATTTGAAAATTTCCAAGGAATTAAGCCTGAAAATGTAGTTGATTTTAGTGTCGTGATCTCaaggatgaagaagaaaatttatGAAGAATCACCTGAACTTTTCTTGTCAGATATTCAACAGGTCTGGAGAAAGCTTCAAAATACTAGTAACAAAATATTTGCATTTTCTAAGAGCCTGATCGACTTGTCAACTACTTCTTACGCTGAGCTGGTTGGAAGTTCAGAGCAGAGCACATTTGAAGATGAAAAGCAAGTGGAATCGGACGCTCACATGAAACCAGAGCAGACGGAAGAATGCGCTATCTATAAAGTTTGCCATTGCAGTTGTTGCAGAGAAAAGGTAGATGGCACAGACTGTTTGGTCTGTGATTCATGTGAGAAGGTGTACCATTTGTCCTGTATTGAGCCTGCAGTGAAAGAAATACCTCACAAAAGCTGGTATTGTGCTGATTGCACCACAAGTGGCATTGGATCTCCACATGAGAATTGTGTAGTATGTGTGAGGTTGAATGGCAAAAAGACTCCCAAGAAAATAATTGGTGATGAAAGTCTCCCTACAAATAAGGAAACATTTGGTGAATTTGAACAGAATTCAAATAGCAGCTATGGTGGGATTCAAGTATCTAGACGTAAGTGGAAAACATTCCATTGCAGAGTGTGTGGAAATGAAGTCGAAGTCAAAGGTGAAGAAATAATAGAATGTGGTCACCCTTTTTGCCACACTCAATATTATCATGTAAGGTGTTTGACAAGCAAACAATTAAATATGTATAGTTATGCGTGGTACTGCCCTTCTTGTATATGCCAAGCTTGCCTCACCAATCAGGATGATGATCGAATTGTCCTCTGTGATGGCTGTGATCATGGATATCACATCTATTGCATGAAACCTCCACTAGTTACTATTCCACAAGGGAAATGGTTCTGCAGAAAATGTGATGCTGGAATGAAGGCAATATCCCAGGCAAAAAAGGCGTATGAGAGTAACAAGCTAAGAACTGGTGAATATATTTCGAAGACAAATgctaataataaaaacaactgCAGCAATGTATGTGTAGAAGAATCGGAAAGTGTTGGAGGAATGGACATGCTTTTAACCGCAGCCAATTGTCTTAATTTCGAAGAGAATTTGTCTGAAACCCGGTTTGGGTAG 2274 0.4063 MGIEEGTSSLGDTECAEGVQCLKHKGISDEVPISNGNGVVEEARSKSEEVNDRAVISNGNCVVEEGNCSKSEEVNDGAVISNGNGVSEEARCSKSEAVSDGVVISNGNCVAEEVRHLESEAMSDDVPISNGNGVVEEAQHLESEAMSSDEAVISNGNGVAEEARHSKSEAVNDGAVLMNINGVAEVNEVLKSDGLNNGVNVTGVTEEDGGLGSEPISNGAVISDGFDSGDGGSCGVTCLRTYKRRKYDKSSLKGKAQVDCNKCVETASHIADQVAKEPFDVTLGLTAYNDHTHWGDVVLKHLHQSLGSVNGGIGEAQIDHLSHRTRTEANGYAPVMQNGSSSESHGQGGTETCQRMLYEVLTSQNFNSLCKTIFENFQGIKPENVVDFSVVISRMKKKIYEESPELFLSDIQQVWRKLQNTSNKIFAFSKSLIDLSTTSYAELVGSSEQSTFEDEKQVESDAHMKPEQTEECAIYKVCHCSCCREKVDGTDCLVCDSCEKVYHLSCIEPAVKEIPHKSWYCADCTTSGIGSPHENCVVCVRLNGKKTPKKIIGDESLPTNKETFGEFEQNSNSSYGGIQVSRRKWKTFHCRVCGNEVEVKGEEIIECGHPFCHTQYYHVRCLTSKQLNMYSYAWYCPSCICQACLTNQDDDRIVLCDGCDHGYHIYCMKPPLVTIPQGKWFCRKCDAGMKAISQAKKAYESNKLRTGEYISKTNANNKNNCSNVCVEESESVGGMDMLLTAANCLNFEENLSETRFG 757
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g02875 757 PANTHER HISTONE ACETYLTRANSFERASE 135 749 - -
Tsu08g02875 757 ProSitePatterns Zinc finger PHD-type signature. 636 685 IPR019786 -
Tsu08g02875 757 ProSiteProfiles Zinc finger PHD-type profile. 587 642 IPR019787 -
Tsu08g02875 757 Gene3D - 370 527 - -
Tsu08g02875 757 SMART PHD_3 643 686 IPR001965 -
Tsu08g02875 757 SMART PHD_3 589 640 IPR001965 -
Tsu08g02875 757 SMART PHD_3 479 525 IPR001965 -
Tsu08g02875 757 SUPERFAMILY FYVE/PHD zinc finger 584 640 IPR011011 -
Tsu08g02875 757 Pfam PHD-finger 480 526 IPR019787 -
Tsu08g02875 757 Pfam PHD-finger 640 686 IPR019787 -
Tsu08g02875 757 SUPERFAMILY FYVE/PHD zinc finger 640 691 IPR011011 -
Tsu08g02875 757 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 640 687 IPR013083 -
Tsu08g02875 757 ProSiteProfiles Zinc finger RING-type profile. 590 639 IPR001841 -
Tsu08g02875 757 PANTHER D4, ISOFORM A 135 749 - -
Tsu08g02875 757 Gene3D Zinc/RING finger domain, C3HC4 (zinc finger) 570 639 IPR013083 -
Tsu08g02875 757 ProSiteProfiles Zinc finger PHD-type profile. 477 527 IPR019787 -
Tsu08g02875 757 SUPERFAMILY FYVE/PHD zinc finger 464 525 IPR011011 -
Tsu08g02875 757 ProSiteProfiles Zinc finger PHD-type profile. 638 688 IPR019787 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu08g02875 Tsu-Chr8 43923384 43931951 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu08g02875 640 707 C2H2 Transcription Factor Family AT3G01460 39.706 2.86e-14 75.5
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR PHD Tsu08g02875 PHD 1e-12 CL0390
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu08g02875 - - gmx:100795906 671.003