Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g02873 ATGCCACGCCATCGTTGCACAGTGTATTCCGAGAGCGATTACGACGACGACGACGATAACATTACCATGAGATGTCTTTCTTGCGAAGATGATTACGATCCCGACGATGCTGGTACCTGCAAAGAATGTTACGACGAAGCTAACGAAACCGAAGAAGAACTCAAACGTCAGATCCAAGACCTAAAATCTAAAGTCTCGTTCCTTACCCTCTCTTCTCCGTTAGATGCTCCTTCCACCACCGATCTCGTTCTTCTTCCTTCCACCGATGCTTTCTCTCCTTCCATTCCCGCTCACAAAGCCGTTCTCGTTAGTCGCTCTCCAGTTTTCAGAGCCATGCTAGAGAATGATATGGAGGAAAGCCGGAGTGGCACCATCAAGATTGCTGATGTATCGTATGATGCCCTTCGTGCCTTTGTTAACTACTTATACACTGCTGAAGCATTCCTTGATAACCAAATGGCCTGCAACCTATTAGTTTTAGCAGAAAAGTATCAGGTGAAGCATCTTAAGGCATATTGTGAGAAGTATTTGATCTCTAAACTGAATTGGGAGAAAGCTATTGTGAACTTTGCCTTTGCACATCAACACAATGCCAACCAATTGCAAGATGCCGCCTTGGCAGTGATCATGGAGAATATGGACAACCTCACTAAAAATGAAGATTATACGGAGTTAGTGGACAGTAATCCTCGTCTTGTTGTGGAAATATATGAAGCTTATCTTTCCAAACAGGTTAATACTGCAGCCACACTCATTTAG 759 0.4387 MPRHRCTVYSESDYDDDDDNITMRCLSCEDDYDPDDAGTCKECYDEANETEEELKRQIQDLKSKVSFLTLSSPLDAPSTTDLVLLPSTDAFSPSIPAHKAVLVSRSPVFRAMLENDMEESRSGTIKIADVSYDALRAFVNYLYTAEAFLDNQMACNLLVLAEKYQVKHLKAYCEKYLISKLNWEKAIVNFAFAHQHNANQLQDAALAVIMENMDNLTKNEDYTELVDSNPRLVVEIYEAYLSKQVNTAATLI 252
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g02873 252 Gene3D Potassium Channel Kv1.1; Chain A 47 181 IPR011333 -
Tsu08g02873 252 SMART BTB_4 80 181 IPR000210 GO:0005515
Tsu08g02873 252 ProSiteProfiles BTB domain profile. 80 151 IPR000210 GO:0005515
Tsu08g02873 252 SUPERFAMILY POZ domain 79 179 IPR011333 -
Tsu08g02873 252 CDD BTB_POZ_ZBTB_KLHL-like 94 164 - -
Tsu08g02873 252 Pfam BTB/POZ domain 76 180 IPR000210 GO:0005515
Tsu08g02873 252 PANTHER SPECKLE-TYPE POZ PROTEIN 20 250 - -
Tsu08g02873 252 Coils Coil 40 71 - -
Tsu08g02873 252 Gene3D - 182 250 - -
Tsu08g02873 252 PANTHER GH01369P 20 250 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu08g02873 Tsu-Chr8 43892720 43895360 Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TRAF Tsu08g02873 BTB 5.4e-23 CL0033
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu08g02873 K10523 - zju:107421125 342.813