Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g02869 atgcaaaaaaattctCCCGACGGCAGCTCCGGTTGCCGGACGGTGGTGGTCGGAGTAAAAATGGATTCTCCTAGCAAAGAGCTTCTCACTTGGGCTTTGGTTAAAGTTGCTCAACCTGGTGATCTTGTTGTTGCTCTGCATGTTCTTGGGACAAATGAAATTGTGAATGGTGATGGGAAATCGTCGCTGCTTTCTCTTGTTAAGGCATTTGACTCTGTTCTTAATGTTTATGAAGGATTCTGTAATTTGAAACAGGTGGATCTTAAGCTAAAAATTTGTCGTGGTTCATCGGTGAAGAAAATTTTGGTACGAGAAGCGAATGGTTATTCTGCAACTCATGTTATTGTTGGAAGTGTTCATAGACTCCATAGAATCCGGTCATCGAGCTCAGTAGCTAAGTACTGTGCAAGAAAGTTATCTAAGGACTGTTGTATTCTTGCTGTTAATAATGGGAAAGTTGTGTTTCAGCGCGACAGCTTGGCAGCATCGACTCCTGTTGCTGATGTACAAGGGTTGGATCGTCATCACGGAAATGGTTTGCTTGGATCAATTCATTGGACACTAAGTAAGAGTACAAAAGTACAAAATGATGATGCTGATGAGGGAACAAGACGAATTTCGGATCATAGTTTAGCTAAGGTTTTACTTGATTCTACGGAAAATGTTAAACATCATAGTTGCTCAATTTGCGGCGCATCGCAAGAGACTTCTTGCCACCAATCTGCAGAAGAGCCAGAGCCTTCAGAAGGATCTGAACGCTCTTCTGTTGATGGTGGCAATGAGAATTCTTTGGCAATAGTGACTGTACAGACCATTGATGCCGGACAACCTGAAATGAAACCTGGCTGGCCACTACTACACCGGAAAATTTTATCAGAAAGGCAATTACTTGATAAACCGTTCATGCGCCACCAGACCTCTGTGGTCCAGTGGGCAATGAAGTTGCCACGCAGAGATCTTTCGTATCGTGTTAATCATATTCAGGATCAATCTGTCGCTTTAGATAGTGAAAGTGGTGCTCTTGTTCCAGTAGATGCGGAAATAGGGAAAACTTATTCGTTGCCTGAAtgcaatttaaaaattattcctAAAGAATTGGAGGTACTTCATGAGAAATACTCATCGACATGCAGATTGTTTGAGTACCAAGAACTTGTATCAGCAACATCAAATTTTTTGCGAGAAAACTTGATCGGTAAAGGAGGAAGTAGTATGGTTTATCGAGGCTGCCTCCGTGATGGCAAGGAACTTGCTGTCAAGATCCTAAAGCCTTCATATGATGTTTTGAAAGAGTTTCTTttggaaattgaaatcatcactACATTGCATCACAAAAACATTATTACACTCCTTGGTTTCTGCTTTGAGAATGGCAATCTTCTTCTGGTCTATGATTTCTTATCAAGAGGAAGCCTCGAAGAGAACATTCACGggactaaaaaaaaCCCCGGCGAGTTTGGTTGGGCGCAGAGATATAAGGTTGCAACAGGTGTTGCCGAGGCTTTGGATTATCTGCATTGTAAAGATGATCAACCTGTGATCCATCGGGATGTAAAATCATCAAATGTATTACTATCTGAAGATTTTGAACCTCAGCTTTCTGATTTTGGATTGGCTACGTGGGCGTCAACCTCATCATCGTATATAACGTGCACAGATGTTGCTGGAACCTTTGGTTATATGGCTCCTGAATACTTCATGTACGGCAAAGTAAGTGATAAGATTGATGTCTATGCGTTCGGTGTCGTGCTGCTTGAGCTTCTTTCAGGGAGAAAGCCCATAAGTGCTGATTTTCCAAAAGGTCAACAGAATCTTGTTATGTGGGCAAGTCCGCTTCTAAATAGCGGAAAGGTGTCAGAATTGTTAGATCCTAATTTGGGTGATAACTATGATCGCAAGGAGATGGAAAGAATGGTCTTAGCAGCCACACTTTGTATCAAAAGTGCTCCAAAAGCTAGGCCTCAAATGAGCATTGTATCAAAGCTACTTCAAGGCGATATTGACGCGATCAAGTGGGCAAAAGTGGAAGTCAATACTTTGGAAGCACACGAAATGCTCGATGACGAAGCATGTCCACCAAGTAATCTACAGTCACATCTTAATCTTGCACTGCTTGATGTGGAAGATGACTCACTCTCCATGTATAGTGTTGAACAAAGTGTGTCACTAGAAGACTACTTGAGAGGCAGGTGGAGCCGATCATCGAGTTTTGACTGA 2217 0.4123 MQKNSPDGSSGCRTVVVGVKMDSPSKELLTWALVKVAQPGDLVVALHVLGTNEIVNGDGKSSLLSLVKAFDSVLNVYEGFCNLKQVDLKLKICRGSSVKKILVREANGYSATHVIVGSVHRLHRIRSSSSVAKYCARKLSKDCCILAVNNGKVVFQRDSLAASTPVADVQGLDRHHGNGLLGSIHWTLSKSTKVQNDDADEGTRRISDHSLAKVLLDSTENVKHHSCSICGASQETSCHQSAEEPEPSEGSERSSVDGGNENSLAIVTVQTIDAGQPEMKPGWPLLHRKILSERQLLDKPFMRHQTSVVQWAMKLPRRDLSYRVNHIQDQSVALDSESGALVPVDAEIGKTYSLPECNLKIIPKELEVLHEKYSSTCRLFEYQELVSATSNFLRENLIGKGGSSMVYRGCLRDGKELAVKILKPSYDVLKEFLLEIEIITTLHHKNIITLLGFCFENGNLLLVYDFLSRGSLEENIHGTKKNPGEFGWAQRYKVATGVAEALDYLHCKDDQPVIHRDVKSSNVLLSEDFEPQLSDFGLATWASTSSSYITCTDVAGTFGYMAPEYFMYGKVSDKIDVYAFGVVLLELLSGRKPISADFPKGQQNLVMWASPLLNSGKVSELLDPNLGDNYDRKEMERMVLAATLCIKSAPKARPQMSIVSKLLQGDIDAIKWAKVEVNTLEAHEMLDDEACPPSNLQSHLNLALLDVEDDSLSMYSVEQSVSLEDYLRGRWSRSSSFD 738
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g02869 738 Pfam Protein kinase domain 395 607 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu08g02869 738 PANTHER OS01G0253100 PROTEIN 7 732 IPR045271 GO:0004714|GO:0006468
Tsu08g02869 738 Gene3D Phosphorylase Kinase; domain 1 360 466 - -
Tsu08g02869 738 SUPERFAMILY Adenine nucleotide alpha hydrolases-like 13 147 - -
Tsu08g02869 738 Pfam Universal stress protein family 13 144 IPR006016 -
Tsu08g02869 738 ProSitePatterns Protein kinases ATP-binding region signature. 398 420 IPR017441 GO:0005524
Tsu08g02869 738 ProSiteProfiles Protein kinase domain profile. 392 644 IPR000719 GO:0004672|GO:0005524|GO:0006468
Tsu08g02869 738 Gene3D HUPs 12 150 IPR014729 -
Tsu08g02869 738 Gene3D Transferase(Phosphotransferase) domain 1 467 680 - -
Tsu08g02869 738 MobiDBLite consensus disorder prediction 234 260 - -
Tsu08g02869 738 CDD STKc_IRAK 398 665 - -
Tsu08g02869 738 PANTHER ADENINE NUCLEOTIDE ALPHA HYDROLASE-LIKE DOMAIN KINASE 7 732 - -
Tsu08g02869 738 SUPERFAMILY Protein kinase-like (PK-like) 373 666 IPR011009 -
Tsu08g02869 738 CDD USP_Like 14 148 - -
Tsu08g02869 738 ProSitePatterns Serine/Threonine protein kinases active-site signature. 513 525 IPR008271 GO:0004672|GO:0006468
Tsu08g02869 738 SMART serkin_6 392 673 IPR000719 GO:0004672|GO:0005524|GO:0006468
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu08g02869 Tsu-Chr8 43851134 43855163 Dispersed/Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu08g02869 379 659 Trihelix Transcription Factor Family AT1G68690 45.993 1.98e-73 249
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
PK RLK-Pelle_RLCK-VI Tsu08g02869 Pkinase 1.3e-43 CL0016
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu08g02869 - - aprc:113846853 1025.77