Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g02865 ATGGGGTCTTGTGGTGAACCTGCAATTGTTGGTGATCCATCTGGTTTGTCTGTAATGGAGCAGCCTTTGAGCTCGGGGTTTGCGGCAGAGTTAGATTCTGTGCAGGAGTTGTGTTCAGAGGAAGCTTGTAATGGTGTGGTTGATGGTTCTGTGGGAGAGGGTCAAGTGGGTTGTTCTGTAAGCTTTGTTGATGTTGCCGAGGGGTGCGGAGATGTTTTGAAAACGGAATGTGAAATTGGTGATATGTTAAAATTGGAGAAAACTGTTGAAGATGATTGTAGGAATAGTTTGGGGATTTGTTCGGAGGACGTTGGAGTGTCTGATCTTAAAAGTGGTGGATTGTGCTCAGAAGGAAATTTTCAAGATGAAGGTTACATTGACTTTCCATTGGAGTCAATAACCTCAGATAATTTGCAGAAGCATTGTGCTGAACAGGGTGAGCAGAAGGATGTCATTGAAGTTTCTGATCTTAAAAGTGGTGGATTGTGCCCGGAAGGAAATTTTCAAGATGAAGGCTACGTTGACATTCCGTTGGAGTcaataatctcaaataatttGCAGAAGCATTGTGCTGAACAGGGTGAGCAGACGCATGTCATTGaagtttctgattttaaaaGCGGTGGATTGTGCTCAGAAGAAAATTTTCAAGATGGACACTACATTGACCTTCCGTTGGAGTCAATAACCTCAAATAATTTGCAGAAGCATTGTGCTGATCAGGGTGAGCAGAAGGATGTCAAAAGCATAATTTTTCCCTCGGCAGGAGATGATTTGGAAGTTGTGGAAGGTAAAACCGATGGTGCTGATTTGCTAGCAGGTGCTGTCAACTGTGTGTTCGATGCTAGACATTCTGAAGAGTGTTTGGAATCAGATTTCGTGACAGATTTGCTAGTTGATTACAACCAGGAAAATGAGCCAGAGGAGATCATGAGAAATGCAGATAGCTTGCCAAGGGTTGTAGAAAAGTGTGATGCTTTAGATGGGATGGACGCCAATTCTTGCAGGCAGATATCTCCTTCACTGGATGTGGAAGTGCCGTCAGGTGCCTTATATGTAGATACAAAAGTACAGAGCACAAGTGATATGCTACATGATCAGAAAAATGGCGAGGATTGTGACAGTACTCATGAAGAAAAGATAAGAACtgatgttgatgaagaaatCACTATTATTTCATATGCACAAGCAAATTCCTCACCAGATTTCCAACGGACCTTGAAGACTTCACCTGTAGTTGATTCACTATGTCAGCCTACCTTGCTGGATCCAGGGAGTGAGTTGCAGAATGGCATATTGCAAATAGAAGATAATTTTTGTATATTGAAGGATTGTTCTTCAGATGGAACTGCCAACTGTTTTAATCCAGAATCAGGTCACTCCTCTCCTGTTTTAATCACCAACAGCTCTCCAAAGGATGTGCCGGATCTCCTTTCCAAGGGTGACGGTGTTTCCATCAACAATAATTGTGCTGTAGACAATCCTGGACAGACAAATAATGATGGAAAAGAAGCTGTTGAAGTTGATTGTGTCACTGAAAGCATATTGTTACCTTCTCAAAGCAGCAGTCAGAGAACCAAATTTGGTCGCAAGACACAAACCAGAAAGTCTTCTAGAAAATCTAAGACCAAAGGCAGTGTGACACATCCAGGTGGGGGTATGAAGATTAACTTAGAGGCCGctagaaagaaaagaagttgtttatccaaaccaGCTCGTTCTTCTGTCTGGGGATTGCTTGGCAATATTGAACAATTTATTCAGTATGAAAATGAGCTCGAGGTTAGTGAAGCCATGTGCCAGAATGAGGGTAAGGCTAGAAACGAGCGTCAAGGTGGGAAAATGATTAAGAATGGTGCAAGTTCTGGGTCATTAAGTTCAGTTCAAAAGTATAATGTTTCAACTTCATCTACTCGTTTTCGTCTGAAGATCAAGTATggaaaagaaaatgatataCATTGCTCAAATGTTCCAGAGTCTGTTGGTGGCTTGGCTTCTGCTTCCTACTTGGGGTCTGATTCAGGTTCTCAGAAAGTAACCAACAATTCTGCAGATAAATTTTCTGAAGTGTCGGATTTAAACAATTTAGAATCATTTAGAAAGGACCTCGACAAGGATAGTGTTGTCGTAAATGGACAAATTGTTAATAGGCAGTtagaaaattctaaaataacGGAGAAGTCAGACAGGGATGCAGAGGAACCATGTCATGGAGTTCCTCCAGAGAGAGTGGTTGAAGAGTTAGTTAAGCCAATTAATAATTCTGTTATAGATCCAGGAACATCGCCTGATTCAGAAGTCATTGATTCCATTCCTGAAGTCCAGGTTGGAGAGATACATGAAGAAGTTGTACATCTTGCTGTGTTAGGTTCTTCTAATGagttaaattctaatatggatgTTACCTTtgggaagagagagaagaaaaaagacaATCTTATTTGTTCAGTAAATTGTGTCACCGAAGATGGATCACAAGGTCAACCAGGGAATAATATAGTTAAGCATTCAAAGAATCACAGACGTAAGAAGAACTGCAATGATGTGGTTAGCTCTTTAGAATTACCTACTTCCACCGAGCTAAGCAAATCTGTAAAGAGTAAAGAATTGGCTGCAGAATCATTGCCCCGTTCTGAAGAGGTTGTACTTGGAGTCTCTACCAAGGCtttgaaagttaaaagtgaTGTGAAAGTCAAGACAGCTGGTAAAACATCCGGTGACCATGGGTTTTCTGAATTCCAGCGTTCCAAAGATTTGGCGTCTTCTACAAGACCTTTGGGTCGTAAATTACCTAAAAGTCTTGAACCTAGTGAAGCTAGCAAGGCCAAATCAAAAGCTTCTGACTCGACAGGCAGGAAAAAGTCTACTACTGGACGCAAGGAGAAACAGAAAGAGCCAATTAACAAAAGTGAAGTCAAGGGAAAAGGTGTCTCTCTCAAAGTTACATGTGACGTGGAAGATCACCCGCATCCAGATGTAGTTGGAAATCATAAGTTGGACGCTGTTGGAAAAGTTAATCACAGTGAGAACAGTGTATCAGTCAATGTATCTAATTTGGACATGCTGTCTGGTTCTGGTTTGGGAGAACAACCTCAGTCACCGCGTAATGCATGGGTGAGTTGTGATGATTGTCACAAGTGGCGCCGTATTCCAGCTTTGCTTGCCGACcagattgatgaaactaactgcACCTGGACTTGCAAGGACAGCAGTGATAAAGCCTCTGCTGATTGTGCTATCCCTCAAGAAAAATCAAATGCAGAGATTAATGCAGAGTTAGGATTATCATATGCGTCTGGTGAAGATGATGTATGCGAAGACTCCAAAAATTATAAGGAATTGGAATATCGACTACCATCAGTTTCCCAAGAGTCAACTTTTACCCGCATCTTCACCAATGAGTTTCTGCACCGCAACCCGAAAACTCAGACTATTGACGAGGTAATGGTTTGTCATTGCAAGCCACCTCCAGAAGGCAAGTTGGGATGTGGGGATGAATGCCTAAATCGGATGCTTAACATTGAATGTGTGCAAGGAACTTGCCCATGTGGGGACTGCTGTTCCAATCAGCAGTTCCAAAAACGCAGCTATTCCAGACTGAAGTGGTTTAAATGTGGGAAAAAAGGTTATGGGCTGAAGGCACTTGAGCGTGTAGCCAAAGGCAACTTCATTATTGAATATGTTGGAGAGGTCCTTGATATGCCTGCATATGAGGCCCGTCAAAGAGAGTATGCTTTGAAGGGTCATAGACATTTCTATTTTATGACCTTAAATGGCAGTGAGGTGATAGATGCAAGTGCAAAAGGAAACTTGGGGCGTTTCATTAATCATAGTTGTGATCCTAATTGTCGGACAGAAAAGTGGATGGTGAATGGGGAAATCTGTATTGGACTGTTTGCATTGCGGACTATCAAGCAGGATGAAGAATTGACGTTTGATTACAACTATGTAAGGGTTTTTGGAGCTGCTGCCAAAAAATGTTATTGTGGTTCACCTCATTGTCGAGGTTATATAGGCGGTGGTGATCCCCTTAATGCTGAGCTTATAGTTCATGGTGATTCGGATGATGAATATCCGGAACCCATGATGCTTACTGAAGATGGTGAAGTTGAGGACAGCACACCTATGCCCTTTGATAATGTTGATACAGAGTCTTCTAGGCATTTATTGGACAAGTCTACAACTGCTATAGATGAAGATGGTTCTCCAGGGAAAGATAGTTCTATGATCCCTGCCTCTGCTGTTTCCCTGTTGCACAGTTCAGTTGAAGCGGAAGACTCAAAAGACAATTTACCATCTTCTGATCAAATAGAAGAAATTTCTCAGCAAATGGAGGAAACAACAAGCAAACCCATGCCTGCTGTCAGCAAAGTGTTGTCGAATTCTACTGATAGTAGAGAATCCAAGTCTGAAATGGTTGAAGGCAGGAATGGTGTTTCACAATCACATCTGCATGTGAAGAAGACTTCTAAACTAAATGCTTCTGTTAAAAAGGCTAAAGTCAGTGCTAATGCTGCAAATGGCCCTACAGCTGAGGTCGCAGCCAATCGATTGCCAGTGTCATCTATCAAGCACAAAAAAGTAATCGAAGGTTCTTCCAATGGACGGTTTGAAGCAGTTCAGGGGAAACTTAATGAGTTGCTGGATGGAAATGGGGGAATAAGCAAAAGAAAAGATGCCACTAAAGGCTACTTGAAACTTTTGCTTCTCACTGTGGCTTCAGGTGATAGATACACTGGTGAAGCAATTCAAAGCAATCGAGATCTTTCCATGATCCTTGATGCTCTTCTGAAAACAAAATCTAGAGCCGTGCTGAATGATATAATTAGTAAAAATGGTTTACAGATGTTGCATAAGATCATGAAGCAGTACAGGAaagatttcaaaaaaattccaataCTACGAAAGCTTCTTAAGGTCTTAGAGTACCTGGCAGAAGGCAAGGTTTTGACACCCGAACATATCAACAGTGGTCCTCCTTGTCACGGAATGGAGAGTTTTAGGCGTTCAATGCTGTCTCTGACAGAGCATGATGACAAACAGGTCCATCAAATTGCTCGAAGCTTCCGAGATAGATGGATTCGAAGAAATGGCAGAAAACGTGGCTATATGGACAGGGATGATAATAGGGTGGAATCTCACAGAAATTTCAACTCTAACAGATTTTCAGTACCACACAATCATAGGCACGAACAGGGATTAAGACCTAAGGAAGAAATTGATTGTGGTCAGCAGTCTATGCTCGCGACAACTTCAACTTCAGTAGACGGTGGCTCCCAGGAGGGCTGCTCTACACCGTCTTTGGATGGAGTTGAGATCAATGGGGTCAAAAAGCGTAAGCGCAAAAGCCGATGGGATCAACCAGCAGAAACAAATTCATATTATGGTGCTGTTATTGGCTCTACCAATGAAAGCCAGAACATGAATGAAGAAATTCCACCAGGGTTTTCATGTCCAATACGTTCTTTAAACAGTGCACTGAACTCGGGCGGTCTTGCTTTGCAAAATGCAAGCCATTCCGGATGGCCCTCTAGTTTAGTTACTGGTCAGCCAAAAGAGAAATTCAATTCTAGTTTGCCCATCGCATATGGAATGCCATGGTCTGTTGCTCAGCAATATGGAACTCCTCATGCTGAAATCACAGGGTGTTGGGTCACTGCTCCTGGCATGCCTTTCAACCCATTTCCTCCATTACCCCCATATCCACGGGATACCCAAGACTGTCAACCTTCTAATACTAATGGTATGGAAATTGATCAACCTGCTCAAGTTAAGCAGCAGGATACCAATGGTTTGGTTAATTGTTGCTCAGAATCAGATGATATGACTACTAGCACAGCTGGTGCTAAGTCTGAAGACACAAACCTTGAATGCGAGGATGATAAACATGACAAGAAGCGGTTGAAGGGTGACTCTAATGATTTGGGGAAGAATTACTTTAGACAACAGAAATGGAACAATTCAAAAATACATCGAACGTGGTTCAAGAGGAATGCATGGAAATGTAACGAGAACAACTCTAGCGGTGATATGTGCAGTGTAGATGTAGGAGATGTATCAAAAGAATCCAAAGTTACTAGTTATTCGGAGGATGCAATCTGTAGAGATGAGAAAGgtggaaaataa 6126 0.4084 MGSCGEPAIVGDPSGLSVMEQPLSSGFAAELDSVQELCSEEACNGVVDGSVGEGQVGCSVSFVDVAEGCGDVLKTECEIGDMLKLEKTVEDDCRNSLGICSEDVGVSDLKSGGLCSEGNFQDEGYIDFPLESITSDNLQKHCAEQGEQKDVIEVSDLKSGGLCPEGNFQDEGYVDIPLESIISNNLQKHCAEQGEQTHVIEVSDFKSGGLCSEENFQDGHYIDLPLESITSNNLQKHCADQGEQKDVKSIIFPSAGDDLEVVEGKTDGADLLAGAVNCVFDARHSEECLESDFVTDLLVDYNQENEPEEIMRNADSLPRVVEKCDALDGMDANSCRQISPSLDVEVPSGALYVDTKVQSTSDMLHDQKNGEDCDSTHEEKIRTDVDEEITIISYAQANSSPDFQRTLKTSPVVDSLCQPTLLDPGSELQNGILQIEDNFCILKDCSSDGTANCFNPESGHSSPVLITNSSPKDVPDLLSKGDGVSINNNCAVDNPGQTNNDGKEAVEVDCVTESILLPSQSSSQRTKFGRKTQTRKSSRKSKTKGSVTHPGGGMKINLEAARKKRSCLSKPARSSVWGLLGNIEQFIQYENELEVSEAMCQNEGKARNERQGGKMIKNGASSGSLSSVQKYNVSTSSTRFRLKIKYGKENDIHCSNVPESVGGLASASYLGSDSGSQKVTNNSADKFSEVSDLNNLESFRKDLDKDSVVVNGQIVNRQLENSKITEKSDRDAEEPCHGVPPERVVEELVKPINNSVIDPGTSPDSEVIDSIPEVQVGEIHEEVVHLAVLGSSNELNSNMDVTFGKREKKKDNLICSVNCVTEDGSQGQPGNNIVKHSKNHRRKKNCNDVVSSLELPTSTELSKSVKSKELAAESLPRSEEVVLGVSTKALKVKSDVKVKTAGKTSGDHGFSEFQRSKDLASSTRPLGRKLPKSLEPSEASKAKSKASDSTGRKKSTTGRKEKQKEPINKSEVKGKGVSLKVTCDVEDHPHPDVVGNHKLDAVGKVNHSENSVSVNVSNLDMLSGSGLGEQPQSPRNAWVSCDDCHKWRRIPALLADQIDETNCTWTCKDSSDKASADCAIPQEKSNAEINAELGLSYASGEDDVCEDSKNYKELEYRLPSVSQESTFTRIFTNEFLHRNPKTQTIDEVMVCHCKPPPEGKLGCGDECLNRMLNIECVQGTCPCGDCCSNQQFQKRSYSRLKWFKCGKKGYGLKALERVAKGNFIIEYVGEVLDMPAYEARQREYALKGHRHFYFMTLNGSEVIDASAKGNLGRFINHSCDPNCRTEKWMVNGEICIGLFALRTIKQDEELTFDYNYVRVFGAAAKKCYCGSPHCRGYIGGGDPLNAELIVHGDSDDEYPEPMMLTEDGEVEDSTPMPFDNVDTESSRHLLDKSTTAIDEDGSPGKDSSMIPASAVSLLHSSVEAEDSKDNLPSSDQIEEISQQMEETTSKPMPAVSKVLSNSTDSRESKSEMVEGRNGVSQSHLHVKKTSKLNASVKKAKVSANAANGPTAEVAANRLPVSSIKHKKVIEGSSNGRFEAVQGKLNELLDGNGGISKRKDATKGYLKLLLLTVASGDRYTGEAIQSNRDLSMILDALLKTKSRAVLNDIISKNGLQMLHKIMKQYRKDFKKIPILRKLLKVLEYLAEGKVLTPEHINSGPPCHGMESFRRSMLSLTEHDDKQVHQIARSFRDRWIRRNGRKRGYMDRDDNRVESHRNFNSNRFSVPHNHRHEQGLRPKEEIDCGQQSMLATTSTSVDGGSQEGCSTPSLDGVEINGVKKRKRKSRWDQPAETNSYYGAVIGSTNESQNMNEEIPPGFSCPIRSLNSALNSGGLALQNASHSGWPSSLVTGQPKEKFNSSLPIAYGMPWSVAQQYGTPHAEITGCWVTAPGMPFNPFPPLPPYPRDTQDCQPSNTNGMEIDQPAQVKQQDTNGLVNCCSESDDMTTSTAGAKSEDTNLECEDDKHDKKRLKGDSNDLGKNYFRQQKWNNSKIHRTWFKRNAWKCNENNSSGDMCSVDVGDVSKESKVTSYSEDAICRDEKGGK 2041
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g02865 2041 ProSiteProfiles AWS domain profile. 1146 1196 IPR006560 GO:0005634|GO:0018024
Tsu08g02865 2041 ProSiteProfiles Zinc finger CW-type profile. 1032 1086 IPR011124 GO:0008270
Tsu08g02865 2041 SMART PostSET_3 1323 1339 IPR003616 -
Tsu08g02865 2041 MobiDBLite consensus disorder prediction 1751 1770 - -
Tsu08g02865 2041 Gene3D SET domain 1110 1339 IPR046341 -
Tsu08g02865 2041 MobiDBLite consensus disorder prediction 898 973 - -
Tsu08g02865 2041 CDD SET_SETD2 1197 1339 IPR044437 GO:0010452|GO:0046975
Tsu08g02865 2041 MobiDBLite consensus disorder prediction 1751 1767 - -
Tsu08g02865 2041 Pfam SET domain 1209 1315 IPR001214 GO:0005515
Tsu08g02865 2041 Pfam AWS domain 1161 1195 IPR006560 GO:0005634|GO:0018024
Tsu08g02865 2041 MobiDBLite consensus disorder prediction 1440 1487 - -
Tsu08g02865 2041 SMART set_7 1198 1321 IPR001214 GO:0005515
Tsu08g02865 2041 Gene3D - 1028 1091 - -
Tsu08g02865 2041 MobiDBLite consensus disorder prediction 1367 1410 - -
Tsu08g02865 2041 Pfam CW-type Zinc Finger 1038 1084 IPR011124 GO:0008270
Tsu08g02865 2041 MobiDBLite consensus disorder prediction 521 554 - -
Tsu08g02865 2041 ProSiteProfiles Post-SET domain profile. 1323 1339 IPR003616 -
Tsu08g02865 2041 MobiDBLite consensus disorder prediction 1943 1965 - -
Tsu08g02865 2041 MobiDBLite consensus disorder prediction 1440 1466 - -
Tsu08g02865 2041 ProSiteProfiles SET domain profile. 1198 1315 IPR001214 GO:0005515
Tsu08g02865 2041 MobiDBLite consensus disorder prediction 529 543 - -
Tsu08g02865 2041 SMART shorttest3 1146 1197 IPR006560 GO:0005634|GO:0018024
Tsu08g02865 2041 PANTHER HISTONE-LYSINE N-METHYLTRANSFERASE, H3 LYSINE-36 SPECIFIC 519 1969 - -
Tsu08g02865 2041 PANTHER SET DOMAIN PROTEINS 519 1969 - -
Tsu08g02865 2041 MobiDBLite consensus disorder prediction 934 971 - -
Tsu08g02865 2041 MobiDBLite consensus disorder prediction 1384 1399 - -
Tsu08g02865 2041 SUPERFAMILY SET domain 1127 1336 IPR046341 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu08g02865 Tsu-Chr8 43812890 43824945 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu08g02865 1180 1339 Su(var)3-9 homologs AT1G73100 34.536 2.25e-19 93.2
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR SET Tsu08g02865 SET 1.1e-17 No_clan
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu08g02865 - - mtr:MTR_3g088625 2964.1