Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g02838 ATGTGTCCTCTAAGAGTCAATGATCAGTATCTGGGCAATATTATGTTGAAGATCAATTCCAAGAGCTCTAGACAGTGGCCTCTGATTTCAAAATATAGAGCATGTGTTCGCACACAGTCTGCAAAAGTCGAAATGATAGATAATTTGTTCAAGAAAGTATCAGATACCGAGGATGAAGGCATCATGAgGGAACTCTTACTCGATTTCTATAATAGTTCTGGGAAGAGAAAACCAGATAATATAATCATTTTCAGGGACGGTGTTAGTGAATCCCAATTCAATCAAGTCCTGAATATCGAACTTGACCAGATCATTGAGGGAATACATGGAGAGACTTTGCTTCCGAAGTCAGGAGAACCAACCACATAcaagaaaatgtttgatgtatgGTTGAAGGAAGTCGAGACATTTGTCATCGGATTGTATAGTCATAGGAAAATGCCAATGCCTTTCGACTTCAGCAAATTTAAATGGGAATCTCCAAAAATGTCAACTCAACCAGACAAAGACAATTGTGGAGTCTTCTGCATGAAATTCCTAGCTGAATGGGAAGGAGACAATAACACCTCAATGAAGTCTTTCAAAGACTGGCACAAACTCAAAAAGTAG 609 0.376 MCPLRVNDQYLGNIMLKINSKSSRQWPLISKYRACVRTQSAKVEMIDNLFKKVSDTEDEGIMRELLLDFYNSSGKRKPDNIIIFRDGVSESQFNQVLNIELDQIIEGIHGETLLPKSGEPTTYKKMFDVWLKEVETFVIGLYSHRKMPMPFDFSKFKWESPKMSTQPDKDNCGVFCMKFLAEWEGDNNTSMKSFKDWHKLKK 202
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g02838 202 SUPERFAMILY Cysteine proteinases 139 186 IPR038765 -
Tsu08g02838 202 ProSiteProfiles Piwi domain profile. 66 106 IPR003165 GO:0003676
Tsu08g02838 202 PANTHER TRANSLATION INITIATION FACTOR 2C, PUTATIVE-RELATED 1 21 - -
Tsu08g02838 202 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2C 1 21 - -
Tsu08g02838 202 PANTHER EUKARYOTIC TRANSLATION INITIATION FACTOR 2C 22 107 - -
Tsu08g02838 202 PANTHER TRANSLATION INITIATION FACTOR 2C, PUTATIVE-RELATED 22 107 - -
Tsu08g02838 202 SUPERFAMILY Ribonuclease H-like 9 111 IPR012337 -
Tsu08g02838 202 Pfam Piwi domain 27 108 IPR003165 GO:0003676
Tsu08g02838 202 Gene3D - 19 128 IPR036397 GO:0003676
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu08g02838 Tsu-Chr8 43557002 43560570 Transposed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu08g02838 22 104 Eukaryotic Initiation Factors Gene Family AT1G48410 45.977 1.81e-15 72.4
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu08g02838 K11593 - gmx:100820376 166.777