Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g02829 atgtcTAATCGTCGTTCATCATTTTCGTCTTCAACAACGTCGTCCATGGCCAAACGACACCCTCCGGTAACAGTCACCGCTTCAGAGAACAACGCCGGTAAAGTTCTAGCATCTGCCAAGAAACGTCCTCCTCTTACCAATCTCACAAATCAAAATGGTCCCcgcaattcttcatcatctttggtTACTAAAGTTGCAAAGACAAAGAAAGAACCTTCACTGTGTAATTCTTCGAGCTCAGCGATTTCTGGCAACAAAAAACCTACTTTGTCGAATGTTAAATCGGCTACTGTTGTTTTTCCTAAGGCCATTACAACTAGTACTACTGCTAGTTCTACATTTTCTGAAAGAAATGGAGTTAGGAATGAAGTTGTTGTTCCATTGGTTGGTAGTACTTTCAATGTTCCTGTTTCGAGTAGTATGGATTTATCATCTCCTGGTAAATCGGATGGAATGTCGGTCTCTATGGACGAGACAATGTCGTCTTGTGATTCTTTTAAGAGTCCTGATATTGAATATGTGGATAATAGTGATGTTCCAGCTGTTGATTCTATTGAGAGGAAGACTTTTTGTAGTCTTAATATTTCTGATTCTAATTACCCCACAGGTAATATTTGTAGTAGAGACATTCTTGTTGAGTTGGAAAAGGGGGATAAAATTGTTAATATTGATAATGATCATGTGGATCCTCAGCTTTGTGCATCTTTTGCTTGTGATATTTACAAACATTTGCGTGCATCTGAGGTAAAGAAAAGACCTTCAATAGACTTCATGGAGAAAATCCAGAAGGACATAAATCCCAGCATGCGAGCTATACTCATTGATTGGCTAGTGGAGGTTGCTGAGGAGTATAGACTTGTACCAGATACATTGTATTTGACGGTAAACTACATCGATCGATATCTTTCTGGGAATCCGATGAACAGACAACAATTACAATTACTTGGAGTTGCTTCTATGATGATTGCCTCTAAATATGAGGAGATTTGTGCACCTCAGGTGGAGGAATTTTGTTATATAACTGATAACACATACTTCAAGGAAGAGGTTTGTGTTGGATTCTTTGCTTcaagttattttgtttatatctTCTGCTTTTAA 1101 0.3688 MSNRRSSFSSSTTSSMAKRHPPVTVTASENNAGKVLASAKKRPPLTNLTNQNGPRNSSSSLVTKVAKTKKEPSLCNSSSSAISGNKKPTLSNVKSATVVFPKAITTSTTASSTFSERNGVRNEVVVPLVGSTFNVPVSSSMDLSSPGKSDGMSVSMDETMSSCDSFKSPDIEYVDNSDVPAVDSIERKTFCSLNISDSNYPTGNICSRDILVELEKGDKIVNIDNDHVDPQLCASFACDIYKHLRASEVKKRPSIDFMEKIQKDINPSMRAILIDWLVEVAEEYRLVPDTLYLTVNYIDRYLSGNPMNRQQLQLLGVASMMIASKYEEICAPQVEEFCYITDNTYFKEEVCVGFFASSYFVYIFCF 366
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g02829 366 MobiDBLite consensus disorder prediction 43 88 - -
Tsu08g02829 366 MobiDBLite consensus disorder prediction 139 159 - -
Tsu08g02829 366 PANTHER CYCLINS 30 350 IPR039361 -
Tsu08g02829 366 MobiDBLite consensus disorder prediction 1 33 - -
Tsu08g02829 366 Gene3D - 239 252 - -
Tsu08g02829 366 Pfam Cyclin, N-terminal domain 239 350 IPR006671 -
Tsu08g02829 366 MobiDBLite consensus disorder prediction 1 88 - -
Tsu08g02829 366 ProSitePatterns Cyclins signature. 270 301 IPR006671 -
Tsu08g02829 366 PIRSF Cyclin_A_B_D_E 2 352 IPR039361 -
Tsu08g02829 366 PANTHER CYCLIN-A1-1 30 350 - -
Tsu08g02829 366 SMART cyclin_7 275 359 IPR013763 -
Tsu08g02829 366 Gene3D - 253 351 - -
Tsu08g02829 366 SUPERFAMILY Cyclin-like 229 351 IPR036915 -
Tsu08g02829 366 CDD CYCLIN 269 348 IPR013763 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu08g02829 Tsu-Chr8 43490269 43498069 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu08g02829 1 350 Core Cell Cycle Gene Families AT1G44110 53.933 5.56e-111 330
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu08g02829 K06627 - gmx:547781 430.254