Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g02828 ATGTCCAAAACTACAAAGACAAAGAAGGATTCCATTGCCAGTTCGCAGAAAAATGTTATGTCTAGGAATATTTTGCAACCCTCATTAAAATCAAGTGGATTATTGCATTCCAAAGAAGCATGCTCGACCAAAGTTAGTCAAACTAAGACTGGAGTTCAAGCTTTTGTTGCGCCAAGCAATGATGGTGCTGTTTGTCCTGATTTTAAGAACAAGGTCTGTGATCCGAGATGGATGGACATCTCTCCAAGTAATTCATTTAGTGGTTCTGCTTCACTAGCTGAGAGCATGTCAACCAACAATTCTTTGATGACTCCGGTGTTAGAATATATTCACAATGATGACGTTATATCGACCAAATCAATTGAGAATAAAACATGTAGCATGCTCAATATTTCAGACTCTTCCAAAATGGCAGGGAGAATACAGGATGTTGACACCGTACTGAAGTCAAGATCAAATGAGATTGTAGACATTGACTGCAATTTCAAAGACCCACGGTTTTGTGCATCCATTGCCCATGAAATCTATGAAAATTTGCGTGCATCTGAGAAAAGTAAAATGCCATCTAAGAACTTCATGGAGAAGATACAGAAAGACATAAATGCTAGCATGCGGGCAATGCTTATTGATTGGCTTGTGGAGGTTGCCGAAGAGTACAGACTTCTACCTGATACACTATTTTTGACAGTTAACTACATTGATCGCTATCTTTCAGGCAAAGCAATGAACAGACAGCGGTTACAACTACTTGGTGTTTCTTGCATGATGATTGCTGCAAAATACGAGGAGATCTGTGCCCCCAAGGCGGAAGAGTTCTGTTATGTAACTGATAATACGTATTCTAAGGAGCAGGTGTTAGAGATGGAGTCCTCTGTGCTGAATTTCTTGAAGTTTGAAATGACGGCTCCTACAACTAGATGTTTTTTGAGACGCTTCATTATTGTTGCCGATAAAACATGTGAGGTATGTATTACAATTGagattctttttaatttctcttATTAG 1005 0.3851 MSKTTKTKKDSIASSQKNVMSRNILQPSLKSSGLLHSKEACSTKVSQTKTGVQAFVAPSNDGAVCPDFKNKVCDPRWMDISPSNSFSGSASLAESMSTNNSLMTPVLEYIHNDDVISTKSIENKTCSMLNISDSSKMAGRIQDVDTVLKSRSNEIVDIDCNFKDPRFCASIAHEIYENLRASEKSKMPSKNFMEKIQKDINASMRAMLIDWLVEVAEEYRLLPDTLFLTVNYIDRYLSGKAMNRQRLQLLGVSCMMIAAKYEEICAPKAEEFCYVTDNTYSKEQVLEMESSVLNFLKFEMTAPTTRCFLRRFIIVADKTCEVCITIEILFNFSY 334
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g02828 334 Pfam Cyclin, N-terminal domain 174 300 IPR006671 -
Tsu08g02828 334 Gene3D - 189 300 - -
Tsu08g02828 334 PANTHER CYCLINS 32 331 IPR039361 -
Tsu08g02828 334 ProSitePatterns Cyclins signature. 205 236 IPR006671 -
Tsu08g02828 334 SMART cyclin_7 210 294 IPR013763 -
Tsu08g02828 334 PANTHER CARBOXY-TERMINAL DOMAIN CYCLIN 32 331 - -
Tsu08g02828 334 MobiDBLite consensus disorder prediction 7 23 - -
Tsu08g02828 334 CDD CYCLIN 204 293 IPR013763 -
Tsu08g02828 334 MobiDBLite consensus disorder prediction 1 23 - -
Tsu08g02828 334 SUPERFAMILY Cyclin-like 163 300 IPR036915 -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu08g02828 Tsu-Chr8 43482489 43485960 Dispersed/Wgd
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu08g02828 75 332 Core Cell Cycle Gene Families AT1G44110 55.725 1.61e-98 297
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu08g02828 K06627 - qsu:112028128 340.117