Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g02827 ATGGCGCCAATCATCCAGAGTACTCAACAATGGGTCGAGAAATATCGACCAAAGCAAGTAAAAGACGTTGCTCACCAAGAAGAAGTAGTTCGAGTTCTCACCAACACTCTCGAAACCGGAAGCTGCCCTCACATGCTCTTCTACGGTCCTCCCGGCACTGGAAAAACCACTACTGCCCTCGCTATCGCTCATCAGCTTTTCGGgCCTGAGCTCTATAAATCTAGGGTTTTGGAACTAAATGCTAGTGATGATCGTGGTATTAATGTTGTTCGGACTAAGATCAAAGATTTCGCTGCTGTGGCTGTCGGTACCAATCAGCGCAAAAACGGTTATCCTTGTCCACCGTATAAGATAATTGTTCTAGATGAGGCAGATTCAATGACAGAAGATGCTCAGAATGCGCTGAGGCGTACAATGGAAACTTACTCTAAAGTTACTAGGTTCTTTTTTATATGCAACTACATAAGCAGGATTATAGAACCACTTGCTTCAAGGTGTGCAAAATTCAGGTTTAAGCCGCTGACAGAAGAAATCATGAGCAACCGGGTATTATACAtttgcaaagaagaaggaatcCACCTTGATGCTGAGGGTCTTTCAACCCTAAGTACTATTTCTCAAGGAGATCTTCGTCGGGCTATAACATACTTGCAGTCTGCTGCTCGCTTATTTGGATCTTCCATTTCTTCGAAGGACCTGATTTCTGTGTCTGGGATTGTTCCAGCAGAGGTTGTTGAGGCACTTCTTAAAGCTTGCAAAAGTGGTAATTTTGATCTAGCCAACAAGGAAGTCAACAATTTCATTGCAGAGGGATATCCAGTCTCTCAGATGCTAACTCAGTTGTTTGAGGCTATTGTTGAAGAAAAGGACATATCAGATGAACAGAAGGCAAGAATATCCAAGAAGCTGGGTGAAGCAGATAAGTGTCTAGTTGATGGTGCCGATGAATATTTGCAGCTTCTTGCTGTTGTCAGCAATACAATACAAGCTTTATGTAACATGCCAGAAGGATTTGCTTAG 1020 0.4216 MAPIIQSTQQWVEKYRPKQVKDVAHQEEVVRVLTNTLETGSCPHMLFYGPPGTGKTTTALAIAHQLFGPELYKSRVLELNASDDRGINVVRTKIKDFAAVAVGTNQRKNGYPCPPYKIIVLDEADSMTEDAQNALRRTMETYSKVTRFFFICNYISRIIEPLASRCAKFRFKPLTEEIMSNRVLYICKEEGIHLDAEGLSTLSTISQGDLRRAITYLQSAARLFGSSISSKDLISVSGIVPAEVVEALLKACKSGNFDLANKEVNNFIAEGYPVSQMLTQLFEAIVEEKDISDEQKARISKKLGEADKCLVDGADEYLQLLAVVSNTIQALCNMPEGFA 339
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g02827 339 Pfam ATPase family associated with various cellular activities (AAA) 45 172 IPR003959 GO:0005524|GO:0016887
Tsu08g02827 339 SMART AAA_5 41 174 IPR003593 -
Tsu08g02827 339 PANTHER REPLICATION FACTOR C SUBUNIT 4 5 330 - -
Tsu08g02827 339 CDD HLD_clamp_RFC 174 233 - -
Tsu08g02827 339 Gene3D - 240 329 - -
Tsu08g02827 339 SUPERFAMILY post-AAA+ oligomerization domain-like 240 325 IPR008921 GO:0003677|GO:0006260
Tsu08g02827 339 Gene3D - 3 173 IPR027417 -
Tsu08g02827 339 Gene3D - 176 239 - -
Tsu08g02827 339 Pfam Replication factor C C-terminal domain 241 325 IPR013748 -
Tsu08g02827 339 SUPERFAMILY P-loop containing nucleoside triphosphate hydrolases 8 233 IPR027417 -
Tsu08g02827 339 PANTHER REPLICATION FACTOR C / DNA POLYMERASE III GAMMA-TAU SUBUNIT 5 330 - -
Tsu08g02827 339 CDD AAA 26 166 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu08g02827 Tsu-Chr8 43469267 43473822 Dispersed
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu08g02827 1 338 Core DNA Replication Machinery Family AT1G21690 77.581 0.0 553
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu08g02827 K10755 - gmx:100798331 609.757