Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g02822 ATGGCAAACTTGATGCAGCAACAGCAGCATCAAGTTAGTGAAACATCCTCAAATCATGATACACAGAAATCAGGATGGAGAAAGTTCTTGCCATATGTTGGTCCTGGTTTTCTTGTTTCCTTGGCTTACCTTGATCCTGGAAACATGGAAACTGATTTGCAAGCAGGAGCTAACCATAGATATGAgCTGTTGTGGATTATACTTATTGGACTCATATTTGCCCTTATAATTCAATCATTGGCTGCAAATCTCGGCGTAACCACCGGGAAACATCTTTCAGAAGTATGTAAAGTTGAGTATCCATTATTTGTGAAGTATTGTTTATGGTTATTAGCAGAGGTTGCTGTCATAGCTGCTGACATACCTGAAGTGATTGGGACAGCATTTGCACTTAACATACTGTTTCACATCCCATTATGGGCAGGAGTTCTGTTGACTGGCTGCAGCACTCTCTTGCTTTTGAGTCTGCAGAGGTTTGGGGTGAGGAAGTTGGAACTACTGATAACAATCCTAGTATTTGTAATGGCTGGATGTTTCTTTGCTGAAATGAGCTATGTAAATCCTCCAGCTTCTGATGTACTAAAGGGAATGTTTGTTCCCAAACTTTCCGGTGAAGGAACCGTAGGCGACGCTATTGCCCTATTGGGCGCCCTTATCATGCCGCACAATCTTTTCCTCCATTCTGCTCTGGTGTTATCTAGAAAAGTTCCTAGTTCTGTGCGAGGCATCAATGATGCATGTAGATACTTTCTCTATGAGAGTGGATTCGCATTGTTTGTGGCGTTTTTAATCAATGTCGCAATGATTTCTGTGTCTGGAACTGTTTGCTCTTCCAGTGATCTTTCTGGAGACGATGTTGAACACTGCAACGATCTTACCCTTAACTCCGCTTCTTTCCTTCTCAAGAATGTGTTGGGAAAGTCAAGCTCAACCATTTATGCCATAGCATTGCTTGCATCAGGACAAAGTTCTACCATCACAGGAACCTACGCAGGGCAGTACATTATGCAGGGTTTCTTGAACATAAGGATGAAAAGGTGGAAAAGAAACTTGATGACTAGGTGCATTGCCATAGCACCTAGTCTTGTTGTTGCCATAGTTGGCGGTTCTTCTGGTTCTAGTCGGCTTATCATCATCGCATCGATGATACTTTCTTTTGAACTTCCATTTGCTTTAATTCCACTCCTTAAGTTTAGCAGCAGTAGTACCAAAATGGGACCTCACAAGAATTCAATGATTATCATTACAATCTCATGGATACTAGGCTCTGGGATCATTGGTATCAATGTATACTACCTCAGTACTGCTTTTGTGAAGTGGATAATTCATAGTAGTCTACCAAAGGTGGCAAATGTGTTCATTGGGATTATAGTTTTTCCTCTAATGGCAATTTATATTCTCTCAGTTATCTATCTCACCTTTAGAAAAGACACGGTTGAGACATTTATCGAGACGAAGAATAACACGGTAACACAAAACCAATTGGAAAAAGGAATGGATCATGATCAGTTAGAGTTGAGCCATGTTCATTATAGAGAAGACTTAGCTGATATCCCATTACCAGAATAA 1569 0.4073 MANLMQQQQHQVSETSSNHDTQKSGWRKFLPYVGPGFLVSLAYLDPGNMETDLQAGANHRYELLWIILIGLIFALIIQSLAANLGVTTGKHLSEVCKVEYPLFVKYCLWLLAEVAVIAADIPEVIGTAFALNILFHIPLWAGVLLTGCSTLLLLSLQRFGVRKLELLITILVFVMAGCFFAEMSYVNPPASDVLKGMFVPKLSGEGTVGDAIALLGALIMPHNLFLHSALVLSRKVPSSVRGINDACRYFLYESGFALFVAFLINVAMISVSGTVCSSSDLSGDDVEHCNDLTLNSASFLLKNVLGKSSSTIYAIALLASGQSSTITGTYAGQYIMQGFLNIRMKRWKRNLMTRCIAIAPSLVVAIVGGSSGSSRLIIIASMILSFELPFALIPLLKFSSSSTKMGPHKNSMIIITISWILGSGIIGINVYYLSTAFVKWIIHSSLPKVANVFIGIIVFPLMAIYILSVIYLTFRKDTVETFIETKNNTVTQNQLEKGMDHDQLELSHVHYREDLADIPLPE 522
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g02822 522 Pfam Natural resistance-associated macrophage protein 50 411 IPR001046 GO:0016020|GO:0030001|GO:0046873
Tsu08g02822 522 Hamap Divalent metal cation transporter MntH [mntH]. 16 437 IPR001046 GO:0016020|GO:0030001|GO:0046873
Tsu08g02822 522 PANTHER SOLUTE CARRIER PROTEIN FAMILY 11 MEMBER 18 522 IPR001046 GO:0016020|GO:0030001|GO:0046873
Tsu08g02822 522 PANTHER METAL TRANSPORTER NRAMP5 18 522 - -
Tsu08g02822 522 TIGRFAM nramp: metal ion transporter, metal ion (Mn2+/Fe2+) transporter (Nramp) family 27 403 IPR001046 GO:0016020|GO:0030001|GO:0046873
Tsu08g02822 522 MobiDBLite consensus disorder prediction 1 23 - -
Tsu08g02822 522 PRINTS Natural resistance-associated macrophage protein signature 349 366 IPR001046 GO:0016020|GO:0030001|GO:0046873
Tsu08g02822 522 PRINTS Natural resistance-associated macrophage protein signature 321 340 IPR001046 GO:0016020|GO:0030001|GO:0046873
Tsu08g02822 522 PRINTS Natural resistance-associated macrophage protein signature 136 155 IPR001046 GO:0016020|GO:0030001|GO:0046873
Tsu08g02822 522 PRINTS Natural resistance-associated macrophage protein signature 381 400 IPR001046 GO:0016020|GO:0030001|GO:0046873
Tsu08g02822 522 PRINTS Natural resistance-associated macrophage protein signature 161 182 IPR001046 GO:0016020|GO:0030001|GO:0046873
Tsu08g02822 522 PRINTS Natural resistance-associated macrophage protein signature 211 234 IPR001046 GO:0016020|GO:0030001|GO:0046873
Tsu08g02822 522 PRINTS Natural resistance-associated macrophage protein signature 108 134 IPR001046 GO:0016020|GO:0030001|GO:0046873
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu08g02822 Tsu-Chr8 43409197 43413482 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu08g02822 22 522 Inorganic Solute Cotransporters AT1G15960 60.040 0.0 623
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu08g02822 K21398 - gmx:100787785 827.394