Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g02821 ATGGCAAGCTCAATGCAACAACAAGAAGTTAGTAATGGTAACAACAATCGCATTGTAGCTGTCAATGTAACCCCTTCTGGTACACCATCTCATGAACATGACTTCTCGAAACCCGATCAGACACCAGGATGGAAAAAGTTCTTGTCATATGTAGGACCTGGTTTTCTTGTCTCCTTGGCTTACCTTGATCCTGGAAATATGGAAACTGATTTGCAAGCAGGAGCTAACCATGGATATGAGCTGCTGTGGATCATACTTATTGGACTCATATTTGCCCTTATAATTCAGTCATTGGCTGCAAATCTTGGAGTATGCACCGGAAAACATCTTTCAGAAATTTGTAAAGCTGAGTACCCATTATTTGTGAAGTACTGCTTATGGATATTAGCAGAGCTTGCTGTCATAGCTGCAGACATACCTGAAGTGATTGGGACAGCTTTTGCACTTAACATACTCTTTCACATCCCAGTATGGGGAGGAGTTCTGTTGACTGGATGCAGCACTCTCTTGTTTTTGGGTCTCCAAAGATTTGGGGTAAGGAAGTTGGAACTGCTTATATCAATCTTAGTATTTGTAATGGCTGCATGTTTCTTTGGAGAAATGAGCTATGTAAAACCCCCTGCTTCTGGTGTTGTTGAGGGAATGTTTGTTCCAAAACTCAAAGGAAATGGTGCCGTAGCCGACGCTATTGCCCTTTTGGGTGCCCTTATCATGCCGCACAATCTTTTCCTTCATTCTGCTTTGGTTCTGTCTAGAAAAATACCTGGTTCTAAGCGCGGCATCAATGATGCATGTAGATACTTTCTCATTGAGAGTGGTTTCGCTTTGTTTGTGGCATTTCTAATCAATATTGCAATGATTTCTGTCACTGGCACTGTTTGCAAAGCCGATGACCTTTCTGGAGAGAATGTTGATCGCTGCAATGATCTTACACTCAACTCCGCTTCTTTCCTTCTCAAGAATGTGTTGGGACGTTCAAGCTCAATCATCTATGCCATAGCATTGCTAGCTTCAGGGCAGAGTTCTGCCATCACTGGAACCTATGCAGGCCAATTTATCATGCAGGGTTTCTTGGACTTGAAGATGAAAAAATGGCTTAGGAACTTGGTGACTAGGATTGTTGCCATAGCACCTAGTCTTGTTGTCTCTATCATTGGTGGTTCTTCTGGAGCTGGAAGACTTATCATCATTGCATCGATGATACTTTCTTTTGAGCTTCCGTTCGCTTTAATTCCACTCCTTAAGTTTAGCAGCAGTGCAACTAAGATGGGACCTCACAAGAATTCTATGATTATCATTGTCATCTCATGGATATTGGGTTTGGGAATCATCGGTATCAATGTGTACTACCTCATTACTGCTTTTGTGGGTTGGTTAATTCATAGCAGTCTACCAAAGGTGGCAAATGTGTTCATTGGGATCATAGTGTTTCCTCTAATGGCACTCTATATTGTATCAGTTATTTATCTAACCTTCAGAAAAGATACTGTTAAAACATATGTGGAGGTTAAGGATGACCCAGCAATGCAAACCCATGTGGAGAAGGGGTTTGTAAGCAATGGTCAGGTAGAGTTGAGTTATGCTCCTTACAGAGAAGATTTAGCTGCTGATATCGTGCTGCCAGAGGGACCTAGGTTGTGA 1641 0.4199 MASSMQQQEVSNGNNNRIVAVNVTPSGTPSHEHDFSKPDQTPGWKKFLSYVGPGFLVSLAYLDPGNMETDLQAGANHGYELLWIILIGLIFALIIQSLAANLGVCTGKHLSEICKAEYPLFVKYCLWILAELAVIAADIPEVIGTAFALNILFHIPVWGGVLLTGCSTLLFLGLQRFGVRKLELLISILVFVMAACFFGEMSYVKPPASGVVEGMFVPKLKGNGAVADAIALLGALIMPHNLFLHSALVLSRKIPGSKRGINDACRYFLIESGFALFVAFLINIAMISVTGTVCKADDLSGENVDRCNDLTLNSASFLLKNVLGRSSSIIYAIALLASGQSSAITGTYAGQFIMQGFLDLKMKKWLRNLVTRIVAIAPSLVVSIIGGSSGAGRLIIIASMILSFELPFALIPLLKFSSSATKMGPHKNSMIIIVISWILGLGIIGINVYYLITAFVGWLIHSSLPKVANVFIGIIVFPLMALYIVSVIYLTFRKDTVKTYVEVKDDPAMQTHVEKGFVSNGQVELSYAPYREDLAADIVLPEGPRL 546
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g02821 546 PRINTS Natural resistance-associated macrophage protein signature 154 173 IPR001046 GO:0016020|GO:0030001|GO:0046873
Tsu08g02821 546 PRINTS Natural resistance-associated macrophage protein signature 367 384 IPR001046 GO:0016020|GO:0030001|GO:0046873
Tsu08g02821 546 PRINTS Natural resistance-associated macrophage protein signature 179 200 IPR001046 GO:0016020|GO:0030001|GO:0046873
Tsu08g02821 546 PRINTS Natural resistance-associated macrophage protein signature 399 418 IPR001046 GO:0016020|GO:0030001|GO:0046873
Tsu08g02821 546 PRINTS Natural resistance-associated macrophage protein signature 339 358 IPR001046 GO:0016020|GO:0030001|GO:0046873
Tsu08g02821 546 PRINTS Natural resistance-associated macrophage protein signature 229 252 IPR001046 GO:0016020|GO:0030001|GO:0046873
Tsu08g02821 546 PRINTS Natural resistance-associated macrophage protein signature 126 152 IPR001046 GO:0016020|GO:0030001|GO:0046873
Tsu08g02821 546 PANTHER SOLUTE CARRIER PROTEIN FAMILY 11 MEMBER 37 542 IPR001046 GO:0016020|GO:0030001|GO:0046873
Tsu08g02821 546 PANTHER METAL TRANSPORTER NRAMP5 37 542 - -
Tsu08g02821 546 TIGRFAM nramp: metal ion transporter, metal ion (Mn2+/Fe2+) transporter (Nramp) family 45 421 IPR001046 GO:0016020|GO:0030001|GO:0046873
Tsu08g02821 546 Pfam Natural resistance-associated macrophage protein 68 429 IPR001046 GO:0016020|GO:0030001|GO:0046873
Tsu08g02821 546 Hamap Divalent metal cation transporter MntH [mntH]. 29 455 IPR001046 GO:0016020|GO:0030001|GO:0046873
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu08g02821 Tsu-Chr8 43399668 43404163 Dispersed/Tandem
       

Functional genes information

Select Gene Gene_start Gene_end Function Ath_gene Identity(%) E-value Score
Tsu08g02821 9 542 Inorganic Solute Cotransporters AT1G15960 58.659 0.0 616
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu08g02821 K21398 - gmx:100787785 868.996