Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g02812 ATGACTGATAGGGTCGACACTGTTGCAAGATTAGCACAATGGAAAATCGATAACTTCGGACCTTGTTCTTACAAAAAATCCGATCCTTTTAAGCTCGGAATTTGGAACTGgtACTTTTCAATAGTAAGGAATAGATTCTTCTCCATACATCtttttccagaatcttctcgtATTTCTAAGGAACATCCACCTGTTGCCAGATTCATTCTTCGTGTCTCCGTTGCGGGTTCTTCCcgcaaatttattatttctccTGTTTATGAAAGGCTGCTTAGATCACAAGATGACTTTGTCTGGCCTGTTGACACTGCTTACGTGGGCCGCTTCATCATAGATGTTGAGTTTCTTGACTTGAAGATATGCCATATGAATGGCGGAGAACCTAGTTCTGTATGGTCATCTGATGGAAATTCACAGTGTGTTGAAGCTCAAAGAACTACTCTCAGTTGCCTCTCTCGCATGCTTGGTGAGGCTATACATGCTGACCTAACCATTATCACGGCCGATGGCACGTTGAGAGCTCACAAGGCAATTTTGTCGGCGAGTTCCCCCGTGTTTCAAAGCATGTTTCATCACAACCTGAAGGAAAAAGAGTCTTCAACAATCCATATTGAAGACATGTCACTTGAATCATGCACTGCTCTTCTAAGTTACTTGTATGGAGCAATTAAACAAGAAGCTTTCCGGAAACACTGTCTTGCATTGCTCGGAGCAGCCAATAAGTATGATATTGGTAGTCTAAAAGACTTATGTGAGGAAAACCTTCTTGAAGATATTAACTCAGAAAATGTTCTTGAGATGCTAAATGAGGCTTGGTTTTATCAATTACACAAGTTAAAGAAAGGATGTTTAACTTTCTTATTTgaatttggtaaaatatatgATGTTAAAGATGATGAAATAAATAACCTTTTCCAGCATGCAGATAGGGAGCTAGTGATGGAAATGTTTCAGGTGATGCTTACAATTTCCAACCCAGAATAG 984 0.377 MTDRVDTVARLAQWKIDNFGPCSYKKSDPFKLGIWNWYFSIVRNRFFSIHLFPESSRISKEHPPVARFILRVSVAGSSRKFIISPVYERLLRSQDDFVWPVDTAYVGRFIIDVEFLDLKICHMNGGEPSSVWSSDGNSQCVEAQRTTLSCLSRMLGEAIHADLTIITADGTLRAHKAILSASSPVFQSMFHHNLKEKESSTIHIEDMSLESCTALLSYLYGAIKQEAFRKHCLALLGAANKYDIGSLKDLCEENLLEDINSENVLEMLNEAWFYQLHKLKKGCLTFLFEFGKIYDVKDDEINNLFQHADRELVMEMFQVMLTISNPE 327
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g02812 327 ProSiteProfiles BTB domain profile. 161 220 IPR000210 GO:0005515
Tsu08g02812 327 SMART BTB_4 161 259 IPR000210 GO:0005515
Tsu08g02812 327 Pfam BTB/POZ domain 159 257 IPR000210 GO:0005515
Tsu08g02812 327 Gene3D Potassium Channel Kv1.1; Chain A 130 288 IPR011333 -
Tsu08g02812 327 PANTHER OS08G0495500 PROTEIN-RELATED 1 327 IPR044714 -
Tsu08g02812 327 SUPERFAMILY POZ domain 145 257 IPR011333 -
Tsu08g02812 327 CDD BTB_POZ_ZBTB_KLHL-like 160 242 - -
Tsu08g02812 327 PANTHER BTB/POZ DOMAIN PLANT PROTEIN 1 327 - -
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu08g02812 Tsu-Chr8 43321849 43324405 Dispersed/Transposed
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TR TRAF Tsu08g02812 BTB 2.7e-22 CL0033
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu08g02812 K10523 - gmx:100787262 535.028