Gene search

Sequence information

Select Gene Cds Cds_length GC_content Pep Pep_length
Tsu08g02790 ATGTTGAAGTCGAAGAATAATTCAAAGAATAAGAAGTCGGATAAGATACATTATCTACGTTATGTTTGTAACAAAGAAGGTTTTAAGAAAGGAAGTTTGCTTAATCCGAAAAACAATCCAATATCAGACAGTCCGGTtgttattgaatttgaaaaagtgaaAGAGAGACCGAAGGAAAGGATTGGTTGTAAAGTTGGAATATCTCTGAAGTTGGATGAAGCATTGAATATTTATAAGATATATAGATGGGAAGGGGATCACTGTCATCCACTACACAGAGAAGAGCATCACCGTTACCTCAGATCATTCCGAGAAGTAAATGAAGTTCAAGGACAGCTTgctgtaattaattttaaagctGAAATGTCGATGAGGATGTCTTATGAAGTCATGGGTCAAGGAGTTGGAGGCACGGAGAATCTCCCATTTCGGTTTTCGGACTTAAAGAATTATTTGATGACAATTCATTCAAAGGAGATGAAGAAGGGTGAAGCAACTGTAATTCAAGAGTTTTTTACGAATGAAGCTTTGTCGAAACCATCTTTTTACTATGATATGCAAGTTGATGCTGCAGAAGACATAGCTAGCATTTTTTGGGCAGATGGAATTATGCAACTGGATTATTCTTTATTTGGCGATGTTATCAGTTTCGATACGACGTACCGAACAAACAATCAATATCGTCCATTAGCTGCCTTTATTGGTTTTGACAATCATCGCAAGAGTGTCTTATTTGGTGCTGCCTTACTGTATGATGAGACAGCTGCTACTTTTGATTGGTTGTTTACAACGTTCTTGAAGTGCATGTTTAATAAGAAACCACGGACGATATATACAGACCAGGCTACTGCGTTGTTGAAGTCAGttccaaatatttttcaagACGACGAATCAGATTTCGACTACAACTGGGATCAAATgatgaaaaattgttttgatgGAAGGCCTATTTCAGACTGGACATGGCTTGTCCAGACTCATAGGAATCGTATGCACTGGTCTTCAGCTTGGGTCAAGTCACATTTTACAGCTGGTCTGAAGACGACTCAGTTAAGTGAGTCTTTCAATGCTTTTCTTCGTGGATTTTTGCAGCCAGACCATTCACTTGTTCAATTCTTTAGTCATTTCAACATTATGGTTTAG 1143 0.3605 MLKSKNNSKNKKSDKIHYLRYVCNKEGFKKGSLLNPKNNPISDSPVVIEFEKVKERPKERIGCKVGISLKLDEALNIYKIYRWEGDHCHPLHREEHHRYLRSFREVNEVQGQLAVINFKAEMSMRMSYEVMGQGVGGTENLPFRFSDLKNYLMTIHSKEMKKGEATVIQEFFTNEALSKPSFYYDMQVDAAEDIASIFWADGIMQLDYSLFGDVISFDTTYRTNNQYRPLAAFIGFDNHRKSVLFGAALLYDETAATFDWLFTTFLKCMFNKKPRTIYTDQATALLKSVPNIFQDDESDFDYNWDQMMKNCFDGRPISDWTWLVQTHRNRMHWSSAWVKSHFTAGLKTTQLSESFNAFLRGFLQPDHSLVQFFSHFNIMV 380
       

Annotation information

Select Seq ID Length Analysis Description Start End IPR GO
Tsu08g02790 380 Pfam FAR1 DNA-binding domain 5 92 IPR004330 -
Tsu08g02790 380 Pfam MULE transposase domain 214 293 IPR018289 -
Tsu08g02790 380 PANTHER OS03G0181600 PROTEIN 295 380 - -
Tsu08g02790 380 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 7 288 IPR031052 GO:0006355
Tsu08g02790 380 PANTHER OS03G0181600 PROTEIN 7 288 - -
Tsu08g02790 380 PANTHER PROTEIN FAR1-RELATED SEQUENCE 10-RELATED 295 380 IPR031052 GO:0006355
       

Duplication type information

Select Gene Chromosome Start End Duplicated_type
Tsu08g02790 Tsu-Chr8 42849826 42851648 Dispersed/Wgd
       

Transcription factors information

Select Regulatory Factors Family Gene Hmm_acc Hmm_name E_value Clan
TF FAR1 Tsu08g02790 FAR1 2.7e-07 CL0274
       

Pathway information

Select Query KO Definition Second KO KEGG Genes ID GHOSTX Score
Tsu08g02790 - - mtr:MTR_0558s0020 394.43